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Related papers: MolQAE: Quantum Autoencoder for Molecular Represen…

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Quantitative imaging methods, such as magnetic resonance fingerprinting (MRF), aim to extract interpretable pathology biomarkers by estimating biophysical tissue parameters from signal evolutions. However, the pattern-matching algorithms or…

Automated computational analysis of the vast chemical space is critical for numerous fields of research such as drug discovery and material science. Representation learning techniques have recently been employed with the primary objective…

Quantitative Methods · Quantitative Biology 2023-05-26 Atakan Yüksel , Erva Ulusoy , Atabey Ünlü , Tunca Doğan

Molecular generative models often assume meaningful latent geometry, but apparent property predictability can reflect sequence-level shortcuts rather than chemical organization. We study this issue in an unsupervised autoregressive…

Machine Learning · Computer Science 2026-05-08 Zakaria Elabid , Jan Andrzejewski , Bartosz Brzoza , Attila Cangi

Quantum reservoir computing exploits fixed quantum dynamics and a trainable linear readout to process temporal data, yet reversing the transformation -- reconstructing the input from the reservoir output -- has been considered intractable…

Quantum Physics · Physics 2026-03-18 Hikaru Wakaura , Taiki Tanimae

Variational autoencoders (VAEs) are fundamental for generative modeling and image reconstruction, yet their performance often struggles to maintain high fidelity in reconstructions. This study introduces a hybrid model, quantum variational…

Computer Vision and Pattern Recognition · Computer Science 2025-03-10 Farina Riaz , Fakhar Zaman , Hajime Suzuki , Sharif Abuadbba , David Nguyen

Quantum machine learning for spin and molecular systems faces critical challenges of scarce labeled data and computationally expensive simulations. To address these limitations, we introduce Hamiltonian-Masked Autoencoding (HMAE), a novel…

Quantum Physics · Physics 2025-10-29 Ibne Farabi Shihab , Sanjeda Akter , Anuj Sharma

Multimodal Variational Autoencoders have emerged as a popular tool to extract effective representations from rich multimodal data. However, such models rely on fusion strategies in latent space that destroy the joint statistical structure…

Machine Learning · Computer Science 2026-03-03 Federico Caretti , Guido Sanguinetti

Molecule generation is to design new molecules with specific chemical properties and further to optimize the desired chemical properties. Following previous work, we encode molecules into continuous vectors in the latent space and then…

Machine Learning · Computer Science 2020-01-16 Chaochao Yan , Sheng Wang , Jinyu Yang , Tingyang Xu , Junzhou Huang

High-throughput approximations of quantum mechanics calculations and combinatorial experiments have been traditionally used to reduce the search space of possible molecules, drugs and materials. However, the interplay of structural and…

Quantum Physics · Physics 2019-10-29 Alain Tchagang , Julio Valdés

Self-supervised learning (SSL) has recently emerged as a key strategy for building foundation models in remote sensing, where the scarcity of annotated data limits the applicability of fully supervised approaches. In this work, we introduce…

Computer Vision and Pattern Recognition · Computer Science 2025-10-28 Vittorio Bernuzzi , Leonardo Rossi , Tomaso Fontanini , Massimo Bertozzi , Andrea Prati

This paper investigates the application of quantum machine learning to End-to-End (E2E) communication systems in wireless fading scenarios. We introduce a novel hybrid quantum-classical autoencoder architecture that combines parameterized…

Information Theory · Computer Science 2025-01-03 Bolun Zhang , Gan Zheng , Nguyen Van Huynh

Interpretable machine learning is rapidly becoming a crucial tool for scientific discovery. Among existing approaches, variational autoencoders (VAEs) have shown promise in extracting the hidden physical features of some input data, with no…

Given the complex geometry of white matter streamlines, Autoencoders have been proposed as a dimension-reduction tool to simplify the analysis streamlines in a low-dimensional latent spaces. However, despite these recent successes, the…

Machine Learning · Statistics 2023-11-21 Andrew Lizarraga , Brandon Taraku , Edouardo Honig , Ying Nian Wu , Shantanu H. Joshi

Missing input sequences are common in medical imaging data, posing a challenge for deep learning models reliant on complete input data. In this work, inspired by MultiMAE [2], we develop a masked autoencoder (MAE) paradigm for multi-modal,…

Computer Vision and Pattern Recognition · Computer Science 2026-02-04 Ayhan Can Erdur , Christian Beischl , Daniel Scholz , Jiazhen Pan , Benedikt Wiestler , Daniel Rueckert , Jan C Peeken

Numerical simulations for engineering applications solve partial differential equations (PDE) to model various physical processes. Traditional PDE solvers are very accurate but computationally costly. On the other hand, Machine Learning…

Machine Learning · Computer Science 2021-10-11 Rishikesh Ranade , Chris Hill , Haiyang He , Amir Maleki , Norman Chang , Jay Pathak

The increasing efficiency and compactness of deep learning architectures, together with hardware improvements, have enabled the complex and high-dimensional modelling of medical volumetric data at higher resolutions. Recently,…

Image and Video Processing · Electrical Eng. & Systems 2020-02-14 Petru-Daniel Tudosiu , Thomas Varsavsky , Richard Shaw , Mark Graham , Parashkev Nachev , Sebastien Ourselin , Carole H. Sudre , M. Jorge Cardoso

Molecular generative models must jointly ensure validity, diversity, and property control, yet existing approaches typically trade off among these objectives. We present MOLPAQ, a modular quantum-classical generator that assembles molecules…

Machine Learning · Computer Science 2026-04-13 Syed Rameez Naqvi , Lu Peng

With quantum resources a precious commodity, their efficient use is highly desirable. Quantum autoencoders have been proposed as a way to reduce quantum memory requirements. Generally, an autoencoder is a device that uses machine learning…

Quantum Physics · Physics 2019-02-18 Alex Pepper , Nora Tischler , Geoff J. Pryde

This paper presents QCommE2E as an open-source simulation framework for end-to-end quantum communication systems, with explicit tutorial emphasis. The primary objective is to develop a comprehensive framework that includes transmitters,…

Quantum Physics · Physics 2026-05-26 Omar Alnaseri

In order to continuously represent molecules, we propose a generative model in the form of a VAE which is operating on the 2D-graph structure of molecules. A side predictor is employed to prune the latent space and help the decoder in…

Machine Learning · Computer Science 2020-04-20 Mohammadamin Tavakoli , Pierre Baldi