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The emergence of foundation models in neuroimaging is driven by the increasing availability of large-scale and heterogeneous brain imaging datasets. Recent advances in self-supervised learning, particularly reconstruction-based objectives,…

Machine Learning · Computer Science 2025-11-04 Ruthwik Reddy Doodipala , Pankaj Pandey , Carolina Torres Rojas , Manob Jyoti Saikia , Ranganatha Sitaram

A fundamental challenge in neuroscience is to decode mental states from brain activity. While functional magnetic resonance imaging (fMRI) offers a non-invasive approach to capture brain-wide neural dynamics with high spatial precision,…

Image and Video Processing · Electrical Eng. & Systems 2025-07-31 Yueh-Po Peng , Vincent K. M. Cheung , Li Su

Integrating visual and linguistic information into a single multimodal representation is an unsolved problem with wide-reaching applications to both natural language processing and computer vision. In this paper, we present a simple method…

Machine Learning · Statistics 2017-03-28 Guillem Collell , Teddy Zhang , Marie-Francine Moens

Brain decoding is a key neuroscience field that reconstructs the visual stimuli from brain activity with fMRI, which helps illuminate how the brain represents the world. fMRI-to-image reconstruction has achieved impressive progress by…

Neurons and Cognition · Quantitative Biology 2025-10-27 Guoying Sun , Weiyu Guo , Tong Shao , Yang Yang , Haijin Zeng , Jie Liu , Jingyong Su

Deep neural networks have been extensively studied for undersampled MRI reconstruction. While achieving state-of-the-art performance, they are trained and deployed specifically for one anatomy with limited generalization ability to another…

Computer Vision and Pattern Recognition · Computer Science 2021-03-10 Xinwen Liu , Jing Wang , Feng Liu , S. Kevin Zhou

Understanding how humans process visual information is one of the crucial steps for unraveling the underlying mechanism of brain activity. Recently, this curiosity has motivated the fMRI-to-image reconstruction task; given the fMRI data…

Computer Vision and Pattern Recognition · Computer Science 2024-09-19 Jaehoon Joo , Taejin Jeong , Seongjae Hwang

Clinical routine and retrospective cohorts commonly include multi-parametric Magnetic Resonance Imaging; however, they are mostly acquired in different anisotropic 2D views due to signal-to-noise-ratio and scan-time constraints. Thus…

Deep learning based generative adversarial networks (GAN) can effectively perform image reconstruction with under-sampled MR data. In general, a large number of training samples are required to improve the reconstruction performance of a…

Image and Video Processing · Electrical Eng. & Systems 2021-05-19 Jun Lv , Guangyuan Li , Xiangrong Tong , Weibo Chen , Jiahao Huang , Chengyan Wang , Guang Yang

This paper considers the problem of undersampled MRI reconstruction. We propose a novel Transformer-based framework for directly processing signal in k-space, going beyond the limitation of regular grids as ConvNets do. We adopt an implicit…

Image and Video Processing · Electrical Eng. & Systems 2022-11-11 Ziheng Zhao , Tianjiao Zhang , Weidi Xie , Yanfeng Wang , Ya Zhang

Many recent approaches in representation learning implicitly assume that uncorrelated views of a data point are sufficient to learn meaningful representations for various downstream tasks. In this work, we challenge this assumption and…

Computer Vision and Pattern Recognition · Computer Science 2025-09-18 Puru Vaish , Felix Meister , Tobias Heimann , Christoph Brune , Jelmer M. Wolterink

Insufficiency of training data is a persistent issue in medical image analysis, especially for task-based functional magnetic resonance images (fMRI) with spatio-temporal imaging data acquired using specific cognitive tasks. In this paper,…

Image and Video Processing · Electrical Eng. & Systems 2023-08-31 Jiyao Wang , Nicha C. Dvornek , Lawrence H. Staib , James S. Duncan

Using only image-sentence pairs, weakly-supervised visual-textual grounding aims to learn region-phrase correspondences of the respective entity mentions. Compared to the supervised approach, learning is more difficult since bounding boxes…

Computer Vision and Pattern Recognition · Computer Science 2023-09-27 Davide Rigoni , Luca Parolari , Luciano Serafini , Alessandro Sperduti , Lamberto Ballan

Recently deep neural networks have been widely and successfully applied in computer vision tasks and attracted growing interests in medical imaging. One barrier for the application of deep neural networks to medical imaging is the need of…

Computer Vision and Pattern Recognition · Computer Science 2018-07-06 Kuang Gong , Kyungsang Kim , Jianan Cui , Ning Guo , Ciprian Catana , Jinyi Qi , Quanzheng Li

Purpose: To develop a self-supervised scan-specific deep learning framework for reconstructing accelerated multiparametric quantitative MRI (qMRI). Methods: We propose REFINE-MORE (REference-Free Implicit NEural representation with MOdel…

Medical Physics · Physics 2025-08-05 Ruimin Feng , Albert Jang , Xingxin He , Fang Liu

There remains an important need for the development of image reconstruction methods that can produce diagnostically useful images from undersampled measurements. In magnetic resonance imaging (MRI), for example, such methods can facilitate…

Image and Video Processing · Electrical Eng. & Systems 2021-06-28 Varun A. Kelkar , Sayantan Bhadra , Mark A. Anastasio

Learning medical visual representations directly from paired radiology reports has become an emerging topic in representation learning. However, existing medical image-text joint learning methods are limited by instance or local supervision…

Computer Vision and Pattern Recognition · Computer Science 2022-10-13 Fuying Wang , Yuyin Zhou , Shujun Wang , Varut Vardhanabhuti , Lequan Yu

Magnetic resonance (MR) images exhibit various contrasts and appearances based on factors such as different acquisition protocols, views, manufacturers, scanning parameters, etc. This generally accessible appearance-related side information…

Image and Video Processing · Electrical Eng. & Systems 2022-03-08 Xinwen Liu , Jing Wang , Cheng Peng , Shekhar S. Chandra , Feng Liu , S. Kevin Zhou

Pretrained language models are remarkably effective in aligning with human brain responses elicited by natural language stimuli, positioning them as promising model organisms for studying language processing in the brain. However, existing…

Computation and Language · Computer Science 2025-10-27 Omer Moussa , Mariya Toneva

Quantitative magnetic resonance imaging (qMRI) provides tissue-specific parameters vital for clinical diagnosis. Although simultaneous multi-parametric qMRI (MP-qMRI) technologies enhance imaging efficiency, robustly reconstructing qMRI…

Image and Video Processing · Electrical Eng. & Systems 2025-06-12 Haonan Zhang , Guoyan Lao , Yuyao Zhang , Hongjiang Wei

Magnetic Resonance Imaging (MRI) scans are time consuming and precarious, since the patients remain still in a confined space for extended periods of time. To reduce scanning time, some experts have experimented with undersampled k spaces,…

Image and Video Processing · Electrical Eng. & Systems 2022-08-25 Kyler Larsen , Arghya Pal , Yogesh Rathi