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Language model (LM) pretraining has led to consistent improvements in many NLP downstream tasks, including named entity recognition (NER). In this paper, we present T-NER (Transformer-based Named Entity Recognition), a Python library for…

Computation and Language · Computer Science 2022-09-27 Asahi Ushio , Jose Camacho-Collados

E-commerce query understanding is the process of inferring the shopping intent of customers by extracting semantic meaning from their search queries. The recent progress of pre-trained masked language models (MLM) in natural language…

Computation and Language · Computer Science 2022-10-11 Haoming Jiang , Tianyu Cao , Zheng Li , Chen Luo , Xianfeng Tang , Qingyu Yin , Danqing Zhang , Rahul Goutam , Bing Yin

Deep learning has significantly accelerated drug discovery, with 'chemical language' processing (CLP) emerging as a prominent approach. CLP learns from molecular string representations (e.g., Simplified Molecular Input Line Entry Systems…

Biomolecules · Quantitative Biology 2025-01-13 Rıza Özçelik , Francesca Grisoni

Representation learning on heterogeneous text-rich networks (HTRNs), which consist of multiple types of nodes and edges with each node associated with textual information, is essential for various real-world applications. Given the success…

Machine Learning · Computer Science 2025-01-23 Qiuyu Zhu , Liang Zhang , Qianxiong Xu , Cheng Long

The characterization of drug-protein interactions is crucial in the high-throughput screening for drug discovery. The deep learning-based approaches have attracted attention because they can predict drug-protein interactions without…

Machine Learning · Computer Science 2020-12-22 QHwan Kim , Joon-Hyuk Ko , Sunghoon Kim , Nojun Park , Wonho Jhe

In sequential CTR prediction, a central design question is at what granularity the target should interact with the user behaviour sequence. Existing models mainly follow two routes. Raw-item architectures such as DIN let the target score…

Information Retrieval · Computer Science 2026-05-26 Yuan Wang , Yue Liu , Jun Zhang , Jie Jiang

Though language model text embeddings have revolutionized NLP research, their ability to capture high-level semantic information, such as relations between entities in text, is limited. In this paper, we propose a novel contrastive learning…

Computation and Language · Computer Science 2023-10-10 Christos Theodoropoulos , James Henderson , Andrei C. Coman , Marie-Francine Moens

Transfer learning with large pretrained transformer-based language models like BERT has become a dominating approach for most NLP tasks. Simply fine-tuning those large language models on downstream tasks or combining it with task-specific…

Computation and Language · Computer Science 2021-08-06 Wenjuan Han , Bo Pang , Yingnian Wu

Effective feature interaction modeling is critical for enhancing the accuracy of click-through rate (CTR) prediction in industrial recommender systems. Most of the current deep CTR models resort to building complex network architectures to…

Information Retrieval · Computer Science 2026-03-24 Honghao Li , Qiuze Ru , Yiwen Zhang , Yi Zhang , Lei Sang , Yun Yang

Low-dose positron emission tomography (PET) image reconstruction methods have potential to significantly improve PET as an imaging modality. Deep learning provides a promising means of incorporating prior information into the image…

Computer Vision and Pattern Recognition · Computer Science 2024-09-11 Cameron Dennis Pain , Yasmeen George , Alex Fornito , Gary Egan , Zhaolin Chen

Reliable biomedical and clinical retrieval requires more than strong ranking performance: it requires a practical way to find systematic model failures and curate the training evidence needed to correct them. Late-interaction models such as…

Information Retrieval · Computer Science 2026-04-22 François Remy

Speech enhancement has benefited from the success of deep learning in terms of intelligibility and perceptual quality. Conventional time-frequency (TF) domain methods focus on predicting TF-masks or speech spectrum,via a naive convolution…

Audio and Speech Processing · Electrical Eng. & Systems 2021-04-16 Liming Zhou , Yongyu Gao , Ziluo Wang , Jiwei Li , Wenbin Zhang

The adaptive immune response, largely mediated by B-cell receptors (BCRs), plays a crucial role for effective pathogen neutralization due to its diversity and antigen specificity. Designing BCRs de novo, or from scratch, has been…

Biomolecules · Quantitative Biology 2024-09-11 Desmond Kuan , Amir Barati Farimani

Protein is linked to almost every life process. Therefore, analyzing the biological structure and property of protein sequences is critical to the exploration of life, as well as disease detection and drug discovery. Traditional protein…

Machine Learning · Computer Science 2021-12-08 Yijia Xiao , Jiezhong Qiu , Ziang Li , Chang-Yu Hsieh , Jie Tang

Implicit Discourse Relation Recognition (IDRR) remains a challenging task due to the requirement for deep semantic understanding in the absence of explicit discourse markers. A further limitation is that existing methods only predict…

Computation and Language · Computer Science 2026-02-26 Heng Wang , Changxing Wu

Pre-trained transformer models shine in many natural language processing tasks and therefore are expected to bear the representation of the input sentence or text meaning. These sentence-level embeddings are also important in…

Computation and Language · Computer Science 2025-02-21 Lukas Stankevičius , Mantas Lukoševičius

We propose a neural language model capable of unsupervised syntactic structure induction. The model leverages the structure information to form better semantic representations and better language modeling. Standard recurrent neural networks…

Computation and Language · Computer Science 2018-02-20 Yikang Shen , Zhouhan Lin , Chin-Wei Huang , Aaron Courville

For protein sequence datasets, unlabeled data has greatly outpaced labeled data due to the high cost of wet-lab characterization. Recent deep-learning approaches to protein prediction have shown that pre-training on unlabeled data can yield…

Machine Learning · Computer Science 2020-12-02 Pascal Sturmfels , Jesse Vig , Ali Madani , Nazneen Fatema Rajani

Click-through rate (CTR) prediction is a critical task in online advertising systems. Most existing methods mainly model the feature-CTR relationship and suffer from the data sparsity issue. In this paper, we propose DeepMCP, which models…

Machine Learning · Computer Science 2019-07-22 Wentao Ouyang , Xiuwu Zhang , Shukui Ren , Chao Qi , Zhaojie Liu , Yanlong Du

We introduce an architecture, the Tensor Product Recurrent Network (TPRN). In our application of TPRN, internal representations learned by end-to-end optimization in a deep neural network performing a textual question-answering (QA) task…

Computation and Language · Computer Science 2017-09-27 Hamid Palangi , Paul Smolensky , Xiaodong He , Li Deng