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Subgraph-enhanced graph neural networks (SGNN) can increase the expressive power of the standard message-passing framework. This model family represents each graph as a collection of subgraphs, generally extracted by random sampling or with…

Machine Learning · Computer Science 2023-04-17 Indro Spinelli , Michele Guerra , Filippo Maria Bianchi , Simone Scardapane

The development of next-generation molecular simulation models requires moving beyond pre-defined functional forms toward machine learning (ML) techniques that directly capture multiscale physics. Here, we demonstrate such an approach using…

Recent works have shown that Large Language Models (LLMs) could empower traditional neuro-symbolic models via programming capabilities to translate language into module descriptions, thus achieving strong visual reasoning results while…

Computer Vision and Pattern Recognition · Computer Science 2023-11-09 Zhenfang Chen , Rui Sun , Wenjun Liu , Yining Hong , Chuang Gan

Symbolic Regression (SR) offers an interpretable alternative to conventional Machine-Learning (ML) approaches, which are often criticized as ``black boxes''. In contrast to standard regression models that require a prescribed functional…

Artificial Intelligence · Computer Science 2026-05-05 Theofanis Aravanis , Grigorios Chrimatopoulos , Mohammad Ferdows , Michalis Xenos , Efstratios Em Tzirtzilakis

Symbolic Regression (SR) algorithms attempt to learn analytic expressions which fit data accurately and in a highly interpretable manner. Conventional SR suffers from two fundamental issues which we address here. First, these methods search…

Cosmology and Nongalactic Astrophysics · Physics 2024-08-05 Deaglan J. Bartlett , Harry Desmond , Pedro G. Ferreira

Symbolic regression refers to the task of finding a closed-form mathematical expression to fit a set of data points. Genetic programming based techniques are the most common algorithms used to tackle this problem, but recently,…

Machine Learning · Computer Science 2025-10-10 Ryan T. Tymkow , Benjamin D. Schnapp , Mojtaba Valipour , Ali Ghodshi

Semantics has become a key topic of research in Genetic Programming (GP). Semantics refers to the outputs (behaviour) of a GP individual when this is run on a data set. The majority of works that focus on semantic diversity in…

Neural and Evolutionary Computing · Computer Science 2021-12-22 Edgar Galván , Leonardo Trujillo , Fergal Stapleton

Mathematical formulas serve as a language through which humans communicate with nature. Discovering mathematical laws from scientific data to describe natural phenomena has been a long-standing pursuit of humanity for centuries. In the…

Artificial Intelligence · Computer Science 2026-05-14 Yanjie Li , Liping Zhang , Min Wu , Weijun Li , Lina Yu , Jingyi Liu , Yusong Deng , Mingzhu Wan , Xin Ning

We introduce a scalable Gaussian process (GP) framework with deep product kernels for data-driven learning of parametrized spatio-temporal fields over fixed or parameter-dependent domains. The proposed framework learns a continuous…

Machine Learning · Computer Science 2026-03-03 Srinath Dama , Prasanth B. Nair

There are many problems in physics, biology, and other natural sciences in which symbolic regression can provide valuable insights and discover new laws of nature. A widespread Deep Neural Networks do not provide interpretable solutions.…

Machine Learning · Computer Science 2023-01-18 Sergei Popov , Mikhail Lazarev , Vladislav Belavin , Denis Derkach , Andrey Ustyuzhanin

We describe and analyze algorithms for shape-constrained symbolic regression, which allows the inclusion of prior knowledge about the shape of the regression function. This is relevant in many areas of engineering -- in particular whenever…

Neural and Evolutionary Computing · Computer Science 2021-07-21 Christian Haider , Fabricio Olivetti de França , Bogdan Burlacu , Gabriel Kronberger

We analyse the search behaviour of genetic programming for symbolic regression in practically relevant but limited settings, allowing exhaustive enumeration of all solutions. This enables us to quantify the success probability of finding…

Neural and Evolutionary Computing · Computer Science 2026-03-30 Gabriel Kronberger , Fabricio Olivetti de Franca , Harry Desmond , Deaglan J. Bartlett , Lukas Kammerer

Offline Handwritten Mathematical Expression Recognition (HMER) has been dramatically advanced recently by employing tree decoders as part of the encoder-decoder method. Despite the tree decoder-based methods regard the expressions as a tree…

Computer Vision and Pattern Recognition · Computer Science 2023-03-14 Zihao Lin , Jinrong Li , Fan Yang , Shuangping Huang , Xu Yang , Jianmin Lin , Ming Yang

Symbolic regression is a technique that can automatically derive analytic models from data. Traditionally, symbolic regression has been implemented primarily through genetic programming that evolves populations of candidate solutions…

Neural and Evolutionary Computing · Computer Science 2025-04-24 Jiří Kubalík , Robert Babuška

State of the art Symbolic Regression (SR) methods currently build specialized models, while the application of Large Language Models (LLMs) remains largely unexplored. In this work, we introduce the first comprehensive framework that…

Computation and Language · Computer Science 2024-09-27 Matteo Merler , Katsiaryna Haitsiukevich , Nicola Dainese , Pekka Marttinen

Transformer-based models trained on large and general purpose datasets consisting of molecular strings have recently emerged as a powerful tool for successfully modeling various structure-property relations. Inspired by this success, we…

Biomolecules · Quantitative Biology 2025-04-02 Jerret Ross , Brian Belgodere , Samuel C. Hoffman , Vijil Chenthamarakshan , Jiri Navratil , Youssef Mroueh , Payel Das

The standard regression tree method applied to observations within clusters poses both methodological and implementation challenges. Effectively leveraging these data requires methods that account for both individual-level and sample-level…

Methodology · Statistics 2025-03-05 Jeremiah Allis , Xin Jin , Riddhi Ghosh

Graphical Transformation Models (GTMs) are introduced as a novel approach to effectively model multivariate data with intricate marginals and complex dependency structures semiparametrically, while maintaining interpretability through the…

Methodology · Statistics 2025-08-28 Matthias Herp , Johannes Brachem , Michael Altenbuchinger , Thomas Kneib

Many real-world datasets can be represented in the form of a graph whose edge weights designate similarities between instances. A discrete Gaussian random field (GRF) model is a finite-dimensional Gaussian process (GP) whose prior…

Machine Learning · Computer Science 2012-09-18 Yifei Ma , Roman Garnett , Jeff Schneider

Traditional machine learning is generally treated as a black-box optimization problem and does not typically produce interpretable functions that connect inputs and outputs. However, the ability to discover such interpretable functions is…

Machine Learning · Computer Science 2024-02-16 Nisal Ranasinghe , Damith Senanayake , Sachith Seneviratne , Malin Premaratne , Saman Halgamuge