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DNA synthesis is considered as one of the most expensive components in current DNA storage systems. In this paper, focusing on a common synthesis machine, which generates multiple DNA strands in parallel following a fixed supersequence,we…

Information Theory · Computer Science 2025-05-13 Yajuan Liu , Tolga M. Duman

This paper presents new lower and upper bounds for the optimal compression of binary prefix codes in terms of the most probable input symbol, where compression efficiency is determined by the nonlinear codeword length objective of…

Information Theory · Computer Science 2008-09-09 Michael Baer

Bayesian optimization works effectively optimizing parameters in black-box problems. However, this method did not work for high-dimensional parameters in limited trials. Parameters can be efficiently explored by nonlinearly embedding them…

Machine Learning · Computer Science 2022-06-14 Shoki Miyagawa , Atsuyoshi Yano , Naoko Sawada , Isamu Ogawa

In this paper, we investigate a neural network-based learning approach towards solving an integer-constrained programming problem using very limited training. To be specific, we introduce a symmetric and decomposed neural network structure,…

Machine Learning · Computer Science 2020-11-30 Zhou Zhou , Shashank Jere , Lizhong Zheng , Lingjia Liu

Despite their high accuracy, complex neural networks demand significant computational resources, posing challenges for deployment on resource constrained devices such as mobile phones and embedded systems. Compression algorithms have been…

Machine Learning · Computer Science 2025-09-23 Ali Aghababaei-Harandi , Massih-Reza Amini

As we amass more LHC data, we continue to search for new and improved methods of visualizing search results, in ways that are as model-independent as possible. The simplified limits framework is an approach developed to recast limits on…

High Energy Physics - Phenomenology · Physics 2021-05-19 R. Sekhar Chivukula , Pawin Ittisamai , James Osborne , Elizabeth H. Simmons

Arrays are ubiquitous in the context of software verification. However, effective reasoning over arrays is still rare in CP, as local reasoning is dramatically ill-conditioned for constraints over arrays. In this paper, we propose an…

Logic in Computer Science · Computer Science 2013-12-03 Sébastien Bardin , Arnaud Gotlieb

We present a successive constraint approach that makes it possible to cheaply solve large-scale linear matrix inequalities for a large number of parameter values. The efficiency of our method is made possible by an offline/online…

Numerical Analysis · Mathematics 2017-08-08 Robert O'Connor

The area of constrained clustering has been extensively explored by researchers and used by practitioners. Constrained clustering formulations exist for popular algorithms such as k-means, mixture models, and spectral clustering but have…

Machine Learning · Computer Science 2021-01-11 Hongjing Zhang , Tianyang Zhan , Sugato Basu , Ian Davidson

Modern decision-making scenarios often involve data that is both high-dimensional and rich in higher-order contextual information, where existing bandits algorithms fail to generate effective policies. In response, we propose in this paper…

Machine Learning · Computer Science 2025-01-24 Jiannan Li , Yiyang Yang , Yao Wang , Shaojie Tang

Due to their sequential nature, traditional DNA synthesis methods are expensive in terms of time and resources. They also fabricate multiple copies of the same strand, introducing redundancy. This redundancy can be leveraged to enhance the…

Information Theory · Computer Science 2025-10-29 Frederik Walter , Yonatan Yehezkeally

Non-uniquely decodable codes can be defined as the codes that cannot be uniquely decoded without additional disambiguation information. These are mainly the class of non-prefix-free codes, where a codeword can be a prefix of other(s), and…

Data Structures and Algorithms · Computer Science 2019-11-14 M. Oğuzhan Külekci , Yasin Öztürk , Elif Altunok , Can Altıniğne

Maximum run-length limited codes are constraint codes used in communication and data storage systems. Insertion/deletion correcting codes correct insertion or deletion errors caused in transmitted sequences and are used for combating…

Information Theory · Computer Science 2020-12-29 Reona Takemoto , Takayuki Nozaki

A number of machine learning algorithms are using a metric, or a distance, in order to compare individuals. The Euclidean distance is usually employed, but it may be more efficient to learn a parametric distance such as Mahalanobis metric.…

Machine Learning · Computer Science 2016-12-16 Hoel Le Capitaine

We argue that parameterized complexity is a useful tool with which to study global constraints. In particular, we show that many global constraints which are intractable to propagate completely have natural parameters which make them…

Artificial Intelligence · Computer Science 2009-03-04 Christian Bessiere , Emmanuel Hebrard , Brahim Hnich , Zeynep Kiziltan , Toby Walsh

This paper studies two families of constraints for two-dimensional and multidimensional arrays. The first family requires that a multidimensional array will not contain a cube of zeros of some fixed size and the second constraint imposes…

Information Theory · Computer Science 2021-02-02 Sagi Marcovich , Eitan Yaakobi

Compressing Deep Neural Network (DNN) models to alleviate the storage and computation requirements is essential for practical applications, especially for resource limited devices. Although capable of reducing a reasonable amount of model…

Machine Learning · Computer Science 2021-06-17 Sheng Lin , Wei Jiang , Wei Wang , Kaidi Xu , Yanzhi Wang , Shan Liu , Songnan Li

Considerable interest has been paid in recent literature to codes combining local and global properties for erasure correction. Applications are in cloud type of implementations, in which fast recovery of a failed storage device is…

Information Theory · Computer Science 2016-02-09 Mario Blaum , Steven R. Hetzler

In this work we consider a generalization of the well-studied problem of coding for ``stuck-at'' errors, which we refer to as ``strong stuck-at'' codes. In the traditional framework of stuck-at codes, the task involves encoding a message…

Information Theory · Computer Science 2024-03-29 Roni Con , Ryan Gabrys , Eitan Yaakobi

This paper introduces a novel control framework to address the satisfaction of multiple time-varying output constraints in uncertain high-order MIMO nonlinear control systems. Unlike existing methods, which often assume that the constraints…

Systems and Control · Electrical Eng. & Systems 2026-03-23 Farhad Mehdifar , Lars Lindemann , Charalampos P. Bechlioulis , Dimos V. Dimarogonas