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The advent of high-throughput sequencing technologies has lead to vast comparative genome sequences. The construction of gene-gene interaction networks or dependence graphs on the genome scale is vital for understanding the regulation of…

Methodology · Statistics 2023-03-06 Xinyao Fan , Harry Joe , Yongjin Park

Path graphs are intersection graphs of paths in a tree.~In this paper we give a "6\ good characterization" of path graphs, namely, we prove that path graph membership is in $NP\cap CoNP$ without resorting to existing polynomial time…

Discrete Mathematics · Computer Science 2021-09-20 Nicola Apollonio , Lorenzo Balzotti

We provide a degree condition on a regular $n$-vertex graph $G$ which ensures the existence of a near optimal packing of any family $\mathcal H$ of bounded degree $n$-vertex $k$-chromatic separable graphs into $G$. In general, this degree…

Combinatorics · Mathematics 2018-11-12 Padraig Condon , Jaehoon Kim , Daniela Kühn , Deryk Osthus

Recently there has been increased interest in semi-supervised classification in the presence of graphical information. A new class of learning models has emerged that relies, at its most basic level, on classifying the data after first…

Machine Learning · Computer Science 2022-02-07 Aseem Baranwal , Kimon Fountoulakis , Aukosh Jagannath

Random graph null models have found widespread application in diverse research communities analyzing network datasets, including social, information, and economic networks, as well as food webs, protein-protein interactions, and neuronal…

Methodology · Statistics 2017-10-12 Bailey K. Fosdick , Daniel B. Larremore , Joel Nishimura , Johan Ugander

In this paper we introduce a general framework for the study of limits of relational structures in general and graphs in particular, which is based on a combination of model theory and (functional) analysis. We show how the various…

Combinatorics · Mathematics 2021-04-23 Jaroslav Nesetril , Patrice Ossona De Mendez

We investigate the structure of connected graphs, not necessarily locally finite, with infinitely many ends. On the one hand we study end-transitive such graphs and on the other hand we study such graphs with the property that the…

Combinatorics · Mathematics 2010-03-19 Matthias Hamann

We strengthen a result by Laskar and Lyle (Discrete Appl. Math. (2009), 330-338) by proving that it is NP-complete to decide whether a bipartite planar graph can be partitioned into three independent dominating sets. In contrast, we show…

Computational Complexity · Computer Science 2019-05-14 Juho Lauri , Christodoulos Mitillos

In the field of parameterized complexity theory, the study of graph width measures has been intimately connected with the development of width-based model checking algorithms for combinatorial properties on graphs. In this work, we…

Data Structures and Algorithms · Computer Science 2026-05-21 Mateus de Oliveira Oliveira , Sam Urmian

The aim of this chapter is to provide an adequate graph theoretic framework for the description of periodic bifurcations which have recently been discovered in descendant trees of finite p-groups. The graph theoretic concepts of rooted…

Group Theory · Mathematics 2017-01-30 Daniel C. Mayer

Many NP-hard graph problems become easy for some classes of graphs. For example, coloring is easy for bipartite graphs, but NP-hard in general. So we can ask question like when does a hard problem become easy? What is the minimum…

Computational Complexity · Computer Science 2025-08-11 Syed Mujtaba Hassan , Shahid Hussain , Abdul Samad

For graph classes $P_1,...,P_k$, Generalized Graph Coloring is the problem of deciding whether the vertex set of a given graph $G$ can be partitioned into subsets $V_1,...,V_k$ so that $V_j$ induces a graph in the class $P_j$…

Combinatorics · Mathematics 2007-05-23 Vladimir E. Alekseev , Alastair Farrugia , Vadim V. Lozin

We study the model-checking problem for first- and monadic second-order logic on finite relational structures. The problem of verifying whether a formula of these logics is true on a given structure is considered intractable in general, but…

Given a graphical degree sequence ${\bf d}=(d_1,\ldots, d_n)$, let $G(n, {\bf d})$ denote a uniformly random graph on vertex set $[n]$ where vertex $ i$ has degree $d_i$ for every $1\le i\le n$. We give upper and lower bounds on the joint…

Combinatorics · Mathematics 2025-05-28 Pu Gao , Yuval Ohapkin

The connectivity structure of graphs is typically related to the attributes of the nodes. In social networks for example, the probability of a friendship between two people depends on their attributes, such as their age, address, and…

Social and Information Networks · Computer Science 2020-02-06 Junning Deng , Bo Kang , Jefrey Lijffijt , Tijl De Bie

Regular colored graphs are dual representations of pure colored D-dimensional complexes. These graphs can be classified with respect to an integer, their degree, much like maps are characterized by the genus. We analyse the structure of…

Combinatorics · Mathematics 2016-02-02 Razvan Gurau , Gilles Schaeffer

There has been much recent interest in random graphs sampled uniformly from the n-vertex graphs in a suitable minor-closed class, such as the class of all planar graphs. Here we use combinatorial and probabilistic methods to investigate a…

Combinatorics · Mathematics 2012-10-10 Colin McDiarmid

Statisticians and quantitative neuroscientists have actively promoted the use of independence relationships for investigating brain networks, genomic networks, and other measurement technologies. Estimation of these graphs depends on two…

Methodology · Statistics 2014-10-15 Fang Han , Huitong Qiu , Han Liu , Brian Caffo

We study the fine-grained complexity of counting the number of colorings and connected spanning edge sets parameterized by the cutwidth and treewidth of the graph. While decompositions of small treewidth decompose the graph with small…

Data Structures and Algorithms · Computer Science 2023-08-01 Carla Groenland , Jesper Nederlof , Isja Mannens , Krisztina Szilágyi

A clique coloring of a graph is an assignment of colors to its vertices such that no maximal clique is monochromatic. We initiate the study of structural parameterizations of the Clique Coloring problem which asks whether a given graph has…

Data Structures and Algorithms · Computer Science 2020-05-12 Lars Jaffke , Paloma T. Lima , Geevarghese Philip
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