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Subgraph similarity search over large-scale graphs is a fundamental task that retrieves subgraphs similar to a given query graph from a data graph, and it plays a crucial role in real applications such as protein discovery, social network…

Databases · Computer Science 2026-03-03 Qi Wen , Xiang Lian , Nan Zhang , Yutong Ye , Mingsong Chen

Subgraph similarity search, one of the core problems in graph search, concerns whether a target graph approximately contains a query graph. The problem is recently touched by neural methods. However, current neural methods do not consider…

Machine Learning · Computer Science 2022-10-20 Linfeng Liu , Xu Han , Dawei Zhou , Li-Ping Liu

Graph similarity search is a common and fundamental operation in graph databases. One of the most popular graph similarity measures is the Graph Edit Distance (GED) mainly because of its broad applicability and high interpretability.…

Databases · Computer Science 2018-01-25 Zijian Li , Xun Jian , Xiang Lian , Lei Chen

Many studies have been conducted on seeking the efficient solution for subgraph similarity search over certain (deterministic) graphs due to its wide application in many fields, including bioinformatics, social network analysis, and…

Databases · Computer Science 2012-05-31 Ye Yuan , Guoren Wang , Lei Chen , Haixun Wang

Approximate Nearest Neighbor Search (ANNS) in high dimensional space is essential in database and information retrieval. Recently, there has been a surge of interest in exploring efficient graph-based indices for the ANNS problem. Among…

Information Retrieval · Computer Science 2021-03-19 Cong Fu , Changxu Wang , Deng Cai

One of the major challenges in applications related to social networks, computational biology, collaboration networks etc., is to efficiently search for similar patterns in their underlying graphs. These graphs are typically noisy and…

Social and Information Networks · Computer Science 2015-12-17 Kanigalpula Samanvi , Naveen Sivadasan

Dense subgraph extraction is a fundamental problem in graph analysis and data mining, aimed at identifying cohesive and densely connected substructures within a given graph. It plays a crucial role in various domains, including social…

Data Structures and Algorithms · Computer Science 2024-03-01 Chia-Yang Hung , Chih-Ya Shen

Edge-labeled graphs are widely used to describe relationships between entities in a database. Given a query subgraph that represents an example of what the user is searching for, we study the problem of efficiently searching for similar…

Databases · Computer Science 2020-05-12 Zhaoyang Shao , Davood Rafiei , Themis Palpanas

The Graph Edit Distance (GED) is an important metric for measuring the similarity between two (labeled) graphs. It is defined as the minimum cost required to convert one graph into another through a series of (elementary) edit operations.…

Databases · Computer Science 2025-11-05 Andrea D'Ascenzo , Julian Meffert , Petra Mutzel , Fabrizio Rossi

Subgraph matching is a NP-complete problem that extracts isomorphic embeddings of a query graph $q$ in a data graph $G$. In this paper, we present a framework with three components: Preprocessing, Reordering and Enumeration. While pruning…

Information Retrieval · Computer Science 2024-05-30 Zite Jiang , Boxiao Liu , Shuai Zhang , Xingzhong Hou , Mengting Yuan , Haihang You

Graphs provide a natural way to represent data by encoding information about objects and the relationships between them. With the ever-increasing amount of data collected and generated, locating specific patterns of relationships between…

Data Structures and Algorithms · Computer Science 2026-04-28 Tatyana Benko , Rebecca Jones , Lucas Tate

Approximate nearest neighbor search (ANNS) is a fundamental problem in databases and data mining. A scalable ANNS algorithm should be both memory-efficient and fast. Some early graph-based approaches have shown attractive theoretical…

Machine Learning · Computer Science 2025-07-08 Cong Fu , Chao Xiang , Changxu Wang , Deng Cai

Subgraph queries also known as subgraph isomorphism search is a fundamental problem in querying graph-like structured data. It consists to enumerate the subgraphs of a data graph that match a query graph. This problem arises in many…

Databases · Computer Science 2018-07-11 C. Nabti , T. Mecharnia , S. E. Boukhetta , H. Seba , K. Amrouche

Graph similarity search is among the most important graph-based applications, e.g. finding the chemical compounds that are most similar to a query compound. Graph similarity computation, such as Graph Edit Distance (GED) and Maximum Common…

Machine Learning · Computer Science 2020-03-03 Yunsheng Bai , Hao Ding , Song Bian , Ting Chen , Yizhou Sun , Wei Wang

In this paper, we study the problem of graph similarity search with graph edit distance (GED) constraints. Due to the NP-hardness of GED computation, existing solutions to this problem adopt the filtering-and-verification framework with a…

Databases · Computer Science 2020-04-03 Jongik Kim

Graph similarity search has received considerable attention in many applications, such as bioinformatics, data mining, pattern recognition, and social networks. Existing methods for this problem have limited scalability because of the huge…

Databases · Computer Science 2016-12-30 Xiaoyang Chen , Hongwei Huo , Jun Huan , Jeffrey Scott Vitter

Given an attributed graph $G$ and a query node $q$, \underline{C}ommunity \underline{S}earch over \underline{A}ttributed \underline{G}raphs (CS-AG) aims to find a structure- and attribute-cohesive subgraph from $G$ that contains $q$.…

Social and Information Networks · Computer Science 2024-03-01 Yuxiang Wang , Shuzhan Ye , Xiaoliang Xu , Yuxia Geng , Zhenghe Zhao , Xiangyu Ke , Tianxing Wu

Approximate nearest neighbor search (ANNS) constitutes an important operation in a multitude of applications, including recommendation systems, information retrieval, and pattern recognition. In the past decade, graph-based ANNS algorithms…

Information Retrieval · Computer Science 2021-05-11 Mengzhao Wang , Xiaoliang Xu , Qiang Yue , Yuxiang Wang

Nearest Neighbor Search (NNS) has recently drawn a rapid increase of interest due to its core role in managing high-dimensional vector data in data science and AI applications. The interest is fueled by the success of neural embedding,…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-01 Zhen Peng , Minjia Zhang , Kai Li , Ruoming Jin , Bin Ren

Graph similarity computation aims to predict a similarity score between one pair of graphs to facilitate downstream applications, such as finding the most similar chemical compounds similar to a query compound or Fewshot 3D Action…

Machine Learning · Computer Science 2021-01-06 Haoyan Xu , Ziheng Duan , Jie Feng , Runjian Chen , Qianru Zhang , Zhongbin Xu , Yueyang Wang
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