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Sparse autoencoders (SAEs) have been applied to large language models and protein language models, but not systematically to electronic health record (EHR) foundation models. We train TopK SAEs on FlatASCEND, a 14.5-million-parameter…

Machine Learning · Computer Science 2026-05-07 Chris Sainsbury , Feng Dong , Andreas Karwath

Recent interpretability work on large language models (LLMs) has been increasingly dominated by a feature-discovery approach with the help of proxy modules. Then, the quality of features learned by, e.g., sparse auto-encoders (SAEs), is…

Machine Learning · Computer Science 2025-10-28 Mengyu Ye , Jun Suzuki , Tatsuro Inaba , Tatsuki Kuribayashi

It is assumed that sparse autoencoders (SAEs) decompose polysemantic activations into interpretable linear directions, as long as the activations are composed of sparse linear combinations of underlying features. However, we find that if an…

Machine Learning · Computer Science 2025-09-29 David Chanin , Tomáš Dulka , Adrià Garriga-Alonso

Sparse autoencoders (SAEs) model the activations of a neural network as linear combinations of sparsely occurring directions of variation (latents). The ability of SAEs to reconstruct activations follows scaling laws w.r.t. the number of…

Machine Learning · Computer Science 2025-09-05 Eric J. Michaud , Liv Gorton , Tom McGrath

Sparse autoencoders (SAEs) are widely used to extract interpretable features from neural network representations, often under the implicit assumption that concepts correspond to independent linear directions. However, a growing body of…

Sparse autoencoders (SAEs) decompose polysemantic neural representations, where neurons respond to multiple unrelated concepts, into monosemantic features that capture single, interpretable concepts. However, standard training objectives…

Computer Vision and Pattern Recognition · Computer Science 2026-02-16 Ali Nasiri-Sarvi , Anh Tien Nguyen , Hassan Rivaz , Dimitris Samaras , Mahdi S. Hosseini

Sparse autoencoders (SAEs) are widely used to extract sparse, interpretable latents from transformer activations. We test whether commonly used SAE quality metrics and automatic explanation pipelines can distinguish trained transformers…

Machine Learning · Computer Science 2026-01-28 Thomas Heap , Tim Lawson , Lucy Farnik , Laurence Aitchison

The linear representation hypothesis states that neural network activations encode high-level concepts as linear mixtures. However, under superposition, this encoding is a projection from a higher-dimensional concept space into a…

Machine Learning · Computer Science 2026-03-31 Vitória Barin Pacela , Shruti Joshi , Isabela Camacho , Simon Lacoste-Julien , David Klindt

Dense embeddings deliver strong retrieval performance but often lack interpretability and controllability. This paper introduces a novel approach using sparse autoencoders (SAE) to interpret and control dense embeddings via the learned…

Information Retrieval · Computer Science 2025-02-25 Hao Kang , Tevin Wang , Chenyan Xiong

It has been long known that sparsity is an effective inductive bias for learning efficient representation of data in vectors with fixed dimensionality, and it has been explored in many areas of representation learning. Of particular…

Computation and Language · Computer Science 2021-04-20 Victor Prokhorov , Yingzhen Li , Ehsan Shareghi , Nigel Collier

Model internals encode rich information about how a large language model (LLM) processes its training data; however, post-training data engineering largely relies on external signals and ignores rich intrinsic signals lying in model…

Machine Learning · Computer Science 2026-05-27 Yi Jing , Zao Dai , Jinwu Hu , Zijun Yao , Lei Hou , Juanzi Li , Xiaozhi Wang

Software vulnerabilities such as buffer overflows and SQL injections are a major source of security breaches. Traditional methods for vulnerability detection remain essential but are limited by high false positive rates, scalability issues,…

Software Engineering · Computer Science 2026-04-10 Rui Melo , Claudia Mamede , Andre Catarino , Rui Abreu , Henrique Lopes Cardoso

Learning rich data representations from unlabeled data is a key challenge towards applying deep learning algorithms in downstream tasks. Several variants of variational autoencoders (VAEs) have been proposed to learn compact data…

Computer Vision and Pattern Recognition · Computer Science 2024-01-11 Pan Xiao , Peijie Qiu , Sungmin Ha , Abdalla Bani , Shuang Zhou , Aristeidis Sotiras

Semantic hashing has become a crucial component of fast similarity search in many large-scale information retrieval systems, in particular, for text data. Variational auto-encoders (VAEs) with binary latent variables as hashing codes…

Machine Learning · Computer Science 2020-05-22 Siamak Zamani Dadaneh , Shahin Boluki , Mingzhang Yin , Mingyuan Zhou , Xiaoning Qian

Sparse Autoencoders (SAEs) are widely used to steer large language models (LLMs), based on the assumption that their interpretable features naturally enable effective model behavior steering. Yet, a fundamental question remains unanswered:…

Machine Learning · Computer Science 2025-10-07 Xu Wang , Yan Hu , Benyou Wang , Difan Zou

We present SAE-BrainMap, a novel framework that directly aligns deep learning visual model representations with voxel-level fMRI responses using sparse autoencoders (SAEs). First, we train layer-wise SAEs on model activations and compute…

Neurons and Cognition · Quantitative Biology 2025-06-16 Ziming Mao , Jia Xu , Zeqi Zheng , Haofang Zheng , Dabing Sheng , Yaochu Jin , Guoyuan Yang

Learned Sparse IR models, such as SPLADE, offer an excellent efficiency-effectiveness tradeoff. However, they rely on the underlying backbone vocabulary, which might hinder performance (polysemicity and synonymy) and pose a challenge for…

Information Retrieval · Computer Science 2026-04-24 Yuxuan Zong , Mathias Vast , Basile Van Cooten , Laure Soulier , Benjamin Piwowarski

Sparse autoencoders (SAEs) are a technique for sparse decomposition of neural network activations into human-interpretable features. However, current SAEs suffer from feature absorption, where specialized features capture instances of…

Machine Learning · Computer Science 2025-09-29 Anton Korznikov , Andrey Galichin , Alexey Dontsov , Oleg Rogov , Elena Tutubalina , Ivan Oseledets

Sparse autoencoders (SAEs) offer a natural path toward comparable explanations across different representation spaces. However, current SAEs are trained per modality, producing dictionaries whose features are not directly understandable and…

Computer Vision and Pattern Recognition · Computer Science 2026-02-10 Difei Gu , Yunhe Gao , Gerasimos Chatzoudis , Zihan Dong , Guoning Zhang , Bangwei Guo , Yang Zhou , Mu Zhou , Dimitris Metaxas

The ability of large language models (LLMs) to follow instructions is crucial for their practical applications, yet the underlying mechanisms remain poorly understood. This paper presents a novel framework that leverages sparse autoencoders…

Machine Learning · Computer Science 2025-02-18 Zirui He , Haiyan Zhao , Yiran Qiao , Fan Yang , Ali Payani , Jing Ma , Mengnan Du