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Clinical patient notes are critical for documenting patient interactions, diagnoses, and treatment plans in medical practice. Ensuring accurate evaluation of these notes is essential for medical education and certification. However, manual…

Computation and Language · Computer Science 2024-01-25 Jingyu Xu , Yifeng Jiang , Bin Yuan , Shulin Li , Tianbo Song

Segmentation is an important analysis task for biomedical images, enabling the study of individual organelles, cells or organs. Deep learning has massively improved segmentation methods, but challenges remain in generalization to new…

Computer Vision and Pattern Recognition · Computer Science 2025-06-03 Carolin Teuber , Anwai Archit , Constantin Pape

Adapting pretrained language models to novel domains, such as clinical applications, traditionally involves retraining their entire set of parameters. Parameter-Efficient Fine-Tuning (PEFT) techniques for fine-tuning language models…

Computation and Language · Computer Science 2024-06-11 Aryo Pradipta Gema , Pasquale Minervini , Luke Daines , Tom Hope , Beatrice Alex

The identification of key factors such as medications, diseases, and relationships within electronic health records and clinical notes has a wide range of applications in the clinical field. In the N2C2 2022 competitions, various tasks were…

Computation and Language · Computer Science 2023-06-14 Shouvon Sarker , Lijun Qian , Xishuang Dong

Electronic health records (EHRs) store an extensive array of patient information, encompassing medical histories, diagnoses, treatments, and test outcomes. These records are crucial for enabling healthcare providers to make well-informed…

Computation and Language · Computer Science 2023-08-07 Yu-Neng Chuang , Ruixiang Tang , Xiaoqian Jiang , Xia Hu

Social networks are vital for information sharing, especially in the health sector for discussing diseases and treatments. These platforms, however, often feature posts as brief texts, posing challenges for Artificial Intelligence (AI) in…

The increasing volume of healthcare textual data requires computationally efficient, yet highly accurate classification approaches able to handle the nuanced and complex nature of medical terminology. This research presents Knowledge…

Computation and Language · Computer Science 2025-05-13 Hajar Sakai , Sarah S. Lam

Few-shot learning and parameter-efficient fine-tuning (PEFT) are crucial to overcome the challenges of data scarcity and ever growing language model sizes. This applies in particular to specialized scientific domains, where researchers…

Computation and Language · Computer Science 2025-09-18 Jonas Rieger , Mattes Ruckdeschel , Gregor Wiedemann

Recent parameter-efficient finetuning (PEFT) techniques aim to improve over the considerable cost of fully finetuning large pretrained language models (PLM). As different PEFT techniques proliferate, it is becoming difficult to compare…

Computation and Language · Computer Science 2023-10-20 Mohammed Sabry , Anya Belz

The NLI4CT task assesses Natural Language Inference systems in predicting whether hypotheses entail or contradict evidence from Clinical Trial Reports. In this study, we evaluate various Large Language Models (LLMs) with multiple…

Computation and Language · Computer Science 2024-04-02 Aryo Pradipta Gema , Giwon Hong , Pasquale Minervini , Luke Daines , Beatrice Alex

Large language models (LLMs) are capable of many natural language tasks, yet they are far from perfect. In health applications, grounding and interpreting domain-specific and non-linguistic data is crucial. This paper investigates the…

Computation and Language · Computer Science 2024-04-30 Yubin Kim , Xuhai Xu , Daniel McDuff , Cynthia Breazeal , Hae Won Park

Parameter-Efficient Fine-Tuning (PEFT) methods have become crucial for rapidly adapting large language models (LLMs) to downstream tasks. Prefix-Tuning, an early and effective PEFT technique, demonstrated the ability to achieve performance…

Computation and Language · Computer Science 2026-04-21 Haonan Wang , Brian Chen , Siquan Li , Xinhe Liang , Hwee Kuan Lee , Kenji Kawaguchi , Tianyang Hu

Clinical trials are central to medical progress because they help improve understanding of human health and the healthcare system. They play a key role in discovering new ways to detect, prevent, or treat diseases, and it is essential that…

Computation and Language · Computer Science 2025-10-16 Surya Tejaswi Yerramsetty , Almas Fathimah

The unstructured nature of clinical notes within electronic health records often conceals vital patient-related information, making it challenging to access or interpret. To uncover this hidden information, specialized Natural Language…

Participant recruitment based on unstructured medical texts such as clinical notes and radiology reports has been a challenging yet important task for the cohort establishment in clinical research. Recently, Large Language Models (LLMs)…

Computation and Language · Computer Science 2023-07-24 Zihan Guan , Zihao Wu , Zhengliang Liu , Dufan Wu , Hui Ren , Quanzheng Li , Xiang Li , Ninghao Liu

Social media has provided a platform for users to gather and share information and stay updated with the news. Such networks also provide a platform to users where they can engage in conversations. However, such micro-blogging platforms…

Social and Information Networks · Computer Science 2020-10-23 Rohan Tondulkar , Manisha Dubey , P. K. Srijith , Michal Lukasik

An increasing number of individuals are willing to post states and opinions in social media, which has become a valuable data resource for studying human health. Furthermore, social media has been a crucial research point for healthcare…

Computation and Language · Computer Science 2023-12-19 Xutong Yue , Xilai Wang , Yuxin He , Zhenkun Zhou

A user-generated text on social media enables health workers to keep track of information, identify possible outbreaks, forecast disease trends, monitor emergency cases, and ascertain disease awareness and response to official health…

Computation and Language · Computer Science 2022-04-12 Usman Naseem , Byoung Chan Lee , Matloob Khushi , Jinman Kim , Adam G. Dunn

Social media posts contain potentially valuable information about medical conditions and health-related behavior. Biocreative VII Task 3 focuses on mining this information by recognizing mentions of medications and dietary supplements in…

Computation and Language · Computer Science 2021-12-01 Carol Anderson , Bo Liu , Anas Abidin , Hoo-Chang Shin , Virginia Adams

Hierarchical text classification (HTC) is a natural language processing task which has the objective of categorising text documents into a set of classes from a predefined structured class hierarchy. Recent HTC approaches use various…

Computation and Language · Computer Science 2025-07-23 Jaco du Toit , Marcel Dunaiski