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Long document classification presents challenges in capturing both local and global dependencies due to their extensive content and complex structure. Existing methods often struggle with token limits and fail to adequately model…
We prove that a polynomial fraction of the set of $k$-component forests in the $m \times n$ grid graph have equal numbers of vertices in each component, for any constant $k$. This resolves a conjecture of Charikar, Liu, Liu, and Vuong, and…
We study the joint distribution of the number of occurrences of members of a collection of nonoverlapping motifs in digital data. We deal with finite and countably infinite collections. For infinite collections, the setting requires that we…
The number of spanning trees of a graph is an important invariant related to topological and dynamic properties of the graph, such as its reliability, communication aspects, synchronization, and so on. However, the practical enumeration of…
Motivated by the question of how macromolecules assemble, the notion of an {\it assembly tree} of a graph is introduced. Given a graph $G$, the paper is concerned with enumerating the number of assembly trees of $G$, a problem that applies…
The class of self-nested trees presents remarkable compression properties because of the systematic repetition of subtrees in their structure. In this paper, we provide a better combinatorial characterization of this specific family of…
The tree metric theorem provides a combinatorial four point condition that characterizes dissimilarity maps derived from pairwise compatible split systems. A similar (but weaker) four point condition characterizes dissimilarity maps derived…
By using biclique partitions of digraphs, this paper gives reduction formulas for the number of oriented spanning trees, stationary distribution vector and Kemeny's constant of digraphs. As applications, we give a method for enumerating…
Employing a recent technology of tree surgery we prove a ``deletion-constriction'' formula for products of rooted spanning trees on weighted directed graphs that generalizes deletion-contraction on undirected graphs. The formula implies…
We propose a network characterization of combinatorial fitness landscapes by adapting the notion of inherent networks proposed for energy surfaces. We use the well-known family of NK landscapes as an example. In our case the inherent…
We study the maximum out forests of a (weighted) digraph and the matrix of maximum out forests. A maximum out forest of a digraph G is a spanning subgraph of G that consists of disjoint diverging trees and has the maximum possible number of…
Let $G$ be a simple strongly connected weighted directed graph. Let $\mathcal{G}$ denote the spanning tree graph of $G$. That is, the vertices of $\mathcal{G}$ consist of the directed rooted spanning trees on $G$, and the edges of…
We explore the limiting empirical eigenvalue distributions arising from matrices of the form \[A_{n+1} = \begin{bmatrix} A_n & I\\ I & A_n \end{bmatrix} , \]where $A_0$ is the adjacency matrix of a $k$-regular graph. We find that for…
We build on recent work of Yeats, Courtiel, and others involving connected chord diagrams. We first derive from a Hopf-algebraic foundation a class of tree-like functional equations and prove that they are solved by weighted generating…
The study of spanning trees and related structures is central in graph theory, closely connected to understanding functions between finite sets. This paper generalizes the established relationship between rooted trees and eventually…
In their study of fundamental groups of one-dimensional path-connected compact metric spaces, Cannon and Conner have asked: Is there a tree-like object that might be considered the topological Cayley graph? We answer this question in the…
In this paper two new graph operations are introduced, and with them the S-trees are studied in depth. This allows to find \(\{-1,0,1\}\)-basis for all the fundamental subspaces of the adjacency matrix of any tree, and to understand in…
An invariant for cospectral graphs is a property shared by all cospectral graphs. In this paper, we establish three novel arithmetic invariants for cospectral graphs, revealing deep connections between spectral properties and combinatorial…
Many of the distributed localization algorithms are based on relaxed optimization formulations of the localization problem. These algorithms commonly rely on first-order optimization methods, and hence may require many iterations or…
Various combinatorial classes such as outerplanar graphs and maps, series-parallel graphs, substitution-closed classes of permutations and many more allow bijective encodings by so-called enriched trees, which are rooted trees with…