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Graph heterophily, where connected nodes have different labels, has attracted significant interest recently. Most existing works adopt a simplified approach - using low-pass filters for homophilic graphs and high-pass filters for…

Machine Learning · Computer Science 2025-10-14 Shuaicheng Zhang , Haohui Wang , Junhong Lin , Xiaojie Guo , Yada Zhu , Si Zhang , Dongqi Fu , Dawei Zhou

Graph neural networks (GNNs) have demonstrated excellent performance in semi-supervised node classification tasks. Despite this, two primary challenges persist: heterogeneity and heterophily. Each of these two challenges can significantly…

Machine Learning · Computer Science 2025-04-14 Kangkang Lu , Yanhua Yu , Zhiyong Huang , Yunshan Ma , Xiao Wang , Meiyu Liang , Yuling Wang , Yimeng Ren , Tat-Seng Chua

Graph Convolutional Networks (GCNs) have been widely applied in various fields due to their significant power on processing graph-structured data. Typical GCN and its variants work under a homophily assumption (i.e., nodes with same class…

Machine Learning · Computer Science 2021-12-28 Tao Wang , Rui Wang , Di Jin , Dongxiao He , Yuxiao Huang

Despite the tremendous success of graph-based learning systems in handling structural data, it has been widely investigated that they are fragile to adversarial attacks on homophilic graph data, where adversaries maliciously modify the…

Machine Learning · Computer Science 2025-09-05 Yulin Zhu , Yuni Lai , Xing Ai , Wai Lun LO , Gaolei Li , Jianhua Li , Di Tang , Xingxing Zhang , Mengpei Yang , Kai Zhou

Homophily, the tendency of similar nodes to connect, is a fundamental phenomenon in network science and a critical factor in the performance of graph neural networks (GNNs). While existing studies primarily explore homophily in homogeneous…

Social and Information Networks · Computer Science 2025-11-18 Zhen Tao , Ziyue Qiao , Chaoqi Chen , Zhengyi Yang , Lun Du , Qingqiang Sun

Graph Convolutional Networks (GCNs) have become a standard approach for semi-supervised node classification, yet practitioners lack clear guidance on when GCNs provide meaningful improvements over simpler baselines. We present a diagnostic…

Machine Learning · Computer Science 2025-12-16 Nischal Subedi , Ember Kerstetter , Winnie Li , Silo Murphy

Graph Neural Networks (GNNs) have emerged as a powerful tool for semi-supervised node classification tasks. However, recent studies have revealed various biases in GNNs stemming from both node features and graph topology. In this work, we…

Machine Learning · Computer Science 2023-05-26 Haoyu Han , Xiaorui Liu , Feng Shi , MohamadAli Torkamani , Charu C. Aggarwal , Jiliang Tang

Graphs with heterophily have been regarded as challenging scenarios for Graph Neural Networks (GNNs), where nodes are connected with dissimilar neighbors through various patterns. In this paper, we present theoretical understandings of the…

Machine Learning · Computer Science 2024-06-05 Junfu Wang , Yuanfang Guo , Liang Yang , Yunhong Wang

Graph Neural Networks (GNNs) have been broadly applied in many urban applications upon formulating a city as an urban graph whose nodes are urban objects like regions or points of interest. Recently, a few enhanced GNN architectures have…

Machine Learning · Computer Science 2023-06-22 Congxi Xiao , Jingbo Zhou , Jizhou Huang , Tong Xu , Hui Xiong

In the past, the dichotomy between homophily and heterophily has inspired research contributions toward a better understanding of Deep Graph Networks' inductive bias. In particular, it was believed that homophily strongly correlates with…

Machine Learning · Computer Science 2023-08-21 Daniele Castellana , Federico Errica

Node classification on graphs is a significant task with a wide range of applications, including social analysis and anomaly detection. Even though graph neural networks (GNNs) have produced promising results on this task, current…

Machine Learning · Computer Science 2023-06-16 Jingyang Yuan , Xiao Luo , Yifang Qin , Yusheng Zhao , Wei Ju , Ming Zhang

While heterophily has been widely studied in node-level tasks, its impact on graph-level tasks remains unclear. We present the first analysis of heterophily in graph-level learning, combining theoretical insights with empirical validation.…

Machine Learning · Computer Science 2025-09-24 Qinhan Hou , Yilun Zheng , Xichun Zhang , Sitao Luan , Jing Tang

Graph Neural Networks (GNNs) exhibit excellent performance when graphs have strong homophily property, i.e. connected nodes have the same labels. However, they perform poorly on heterophilic graphs. Several approaches address the issue of…

Machine Learning · Computer Science 2021-07-29 Vijay Lingam , Rahul Ragesh , Arun Iyer , Sundararajan Sellamanickam

While a growing body of literature has been studying new Graph Neural Networks (GNNs) that work on both homophilic and heterophilic graphs, little has been done on adapting classical GNNs to less-homophilic graphs. Although the ability to…

Machine Learning · Computer Science 2024-04-30 Shouheng Li , Dongwoo Kim , Qing Wang

Homophily is a graph property describing the tendency of edges to connect similar nodes. There are several measures used for assessing homophily but all are known to have certain drawbacks: in particular, they cannot be reliably used for…

Machine Learning · Computer Science 2024-12-16 Mikhail Mironov , Liudmila Prokhorenkova

Graph Neural Networks (GNNs) extend basic Neural Networks (NNs) by using the graph structures based on the relational inductive bias (homophily assumption). Though GNNs are believed to outperform NNs in real-world tasks, performance…

Machine Learning · Computer Science 2021-09-14 Sitao Luan , Chenqing Hua , Qincheng Lu , Jiaqi Zhu , Mingde Zhao , Shuyuan Zhang , Xiao-Wen Chang , Doina Precup

Graph neural networks (GNNs) have demonstrated success in modeling relational data, especially for data that exhibits homophily: when a connection between nodes tends to imply that they belong to the same class. However, while this…

Machine Learning · Computer Science 2023-06-23 Andreea Deac , Jian Tang

Recent studies on Graph Neural Networks(GNNs) provide both empirical and theoretical evidence supporting their effectiveness in capturing structural patterns on both homophilic and certain heterophilic graphs. Notably, most real-world…

Machine Learning · Computer Science 2023-10-17 Haitao Mao , Zhikai Chen , Wei Jin , Haoyu Han , Yao Ma , Tong Zhao , Neil Shah , Jiliang Tang

Graph Neural Networks (GNNs) have achieved great success but are often considered to be challenged by varying levels of homophily in graphs. Recent \textit{empirical} studies have surprisingly shown that homophilic GNNs can perform well…

Machine Learning · Computer Science 2025-10-27 Ming Gu , Zhuonan Zheng , Sheng Zhou , Meihan Liu , Jiawei Chen , Tanyu Qiao , Liangcheng Li , Jiajun Bu

Graph self-training (GST), which selects and assigns pseudo-labels to unlabeled nodes, is popular for tackling label sparsity in graphs. However, recent study on homophily graphs show that GST methods could introduce and amplify…

Social and Information Networks · Computer Science 2024-07-26 Fali Wang , Tianxiang Zhao , Junjie Xu , Suhang Wang