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We introduce a novel positional encoding strategy for Transformer-style models, addressing the shortcomings of existing, often ad hoc, approaches. Our framework provides a flexible mapping from the algebraic specification of a domain to an…

Machine Learning · Computer Science 2024-11-01 Konstantinos Kogkalidis , Jean-Philippe Bernardy , Vikas Garg

Transformers often struggle to generalize to longer sequences than those seen during training, a limitation known as length extrapolation. Most existing Relative Positional Encoding (RPE) methods attempt to address this by introducing…

Computation and Language · Computer Science 2025-09-23 Ali Veisi , Hamidreza Amirzadeh , Amir Mansourian

The adoption of Transformer-based architectures in the medical domain is growing rapidly. In medical imaging, the analysis of complex shapes - such as organs, tissues, or other anatomical structures - combined with the often anisotropic…

Computer Vision and Pattern Recognition · Computer Science 2025-09-03 Nabil Jabareen , Dongsheng Yuan , Dingming Liu , Foo-Wei Ten , Sören Lukassen

Positional Encodings (PEs) are a critical component of Transformer-based Large Language Models (LLMs), providing the attention mechanism with important sequence-position information. One of the most popular types of encoding used today in…

Computation and Language · Computer Science 2025-05-14 Federico Barbero , Alex Vitvitskyi , Christos Perivolaropoulos , Razvan Pascanu , Petar Veličković

In this work, we leverage the intrinsic segmentation of language sequences and design a new positional encoding method called Bilevel Positional Encoding (BiPE). For each position, our BiPE blends an intra-segment encoding and an…

Machine Learning · Computer Science 2024-06-18 Zhenyu He , Guhao Feng , Shengjie Luo , Kai Yang , Liwei Wang , Jingjing Xu , Zhi Zhang , Hongxia Yang , Di He

Fourier features based positional encoding (PE) is commonly used in machine learning tasks that involve learning high-frequency features from low-dimensional inputs, such as 3D view synthesis and time series regression with neural tangent…

Machine Learning · Computer Science 2024-07-18 Chuanhao Sun , Zhihang Yuan , Kai Xu , Luo Mai , N. Siddharth , Shuo Chen , Mahesh K. Marina

Tables are ubiquitous across various domains for concisely representing structured information. Empowering large language models (LLMs) to reason over tabular data represents an actively explored direction. However, since typical LLMs only…

Computation and Language · Computer Science 2024-10-21 Jia-Nan Li , Jian Guan , Wei Wu , Zhengtao Yu , Rui Yan

While music remains a challenging domain for generative models like Transformers, recent progress has been made by exploiting suitable musically-informed priors. One technique to leverage information about musical structure in Transformers…

Sound · Computer Science 2025-02-18 Manvi Agarwal , Changhong Wang , Gael Richard

Transformers rely on both content-based and position-based addressing mechanisms to make predictions, but existing positional encoding techniques often diminish the effectiveness of position-based addressing. Many current methods enforce…

Computation and Language · Computer Science 2025-08-22 Jiajun Zhu , Peihao Wang , Ruisi Cai , Jason D. Lee , Pan Li , Zhangyang Wang

In this work, we theoretically demonstrate that current graph positional encodings (PEs) are not beneficial and could potentially hurt performance in tasks involving heterophilous graphs, where nodes that are close tend to have different…

Machine Learning · Computer Science 2025-04-30 Michael Ito , Jiong Zhu , Dexiong Chen , Danai Koutra , Jenna Wiens

Transformer-based models have become the dominant paradigm for neural combinatorial optimization (NCO) of vehicle routing problems (VRPs), yet the role of positional encoding (PE) in these architectures remains largely unexplored. Unlike…

Length extrapolation algorithms based on Rotary position embedding (RoPE) have shown promising results in extending the context length of language models. However, understanding how position embedding can capture longer-range contextual…

Computation and Language · Computer Science 2024-10-22 Xiangyu Hong , Che Jiang , Biqing Qi , Fandong Meng , Mo Yu , Bowen Zhou , Jie Zhou

This study reports an unintuitive finding that positional encoding enhances learning of recurrent neural networks (RNNs). Positional encoding is a high-dimensional representation of time indices on input data. Most famously, positional…

Machine Learning · Computer Science 2024-11-28 Takashi Morita

Extending the context length of Language Models (LMs) by improving Rotary Position Embedding (RoPE) has become a trend. While prior works mainly address RoPE's limitations within attention, this paper uncovers the adverse effects on length…

Artificial Intelligence · Computer Science 2025-07-15 Ermo Hua , Che Jiang , Xingtai Lv , Kaiyan Zhang , Youbang Sun , Yuchen Fan , Xuekai Zhu , Biqing Qi , Ning Ding , Bowen Zhou

We propose a new positional encoding method for a neural network architecture called the Transformer. Unlike the standard sinusoidal positional encoding, our approach is based on solid mathematical grounds and has a guarantee of not losing…

Machine Learning · Computer Science 2024-05-17 Tsuyoshi Idé , Jokin Labaien , Pin-Yu Chen

A recent variation of Transformer, Performer, scales Transformer to longer sequences with a linear attention mechanism. However, it is not compatible with relative position encoding, which has advantages over absolute position encoding. In…

Computation and Language · Computer Science 2021-09-09 Peng Chen

Positional encodings are essential to transformer-based generative models, yet their behavior in multimodal and attention-sharing settings is not fully understood. In this work, we present a principled analysis of Rotary Positional…

Graphics · Computer Science 2026-02-06 Aryan Mikaeili , Or Patashnik , Andrea Tagliasacchi , Daniel Cohen-Or , Ali Mahdavi-Amiri

Positional encoding is essential for supplementing transformer with positional information of tokens. Existing positional encoding methods demand predefined token/feature order, rendering them unsuitable for real-world data with…

Machine Learning · Computer Science 2025-09-25 Kaichen Xu , Yihang Du , Mianpeng Liu , Zimu Yu , Xiaobo Sun

The attention mechanism in a Transformer architecture matches key to query based on both content -- the what -- and position in a sequence -- the where. We present an analysis indicating that what and where are entangled in the popular RoPE…

Machine Learning · Computer Science 2025-12-24 Anand Gopalakrishnan , Robert Csordás , Jürgen Schmidhuber , Michael C. Mozer

Length generalization, defined as the ability to extrapolate from shorter training sequences to longer test ones, is a significant challenge for language models. This issue persists even with large-scale Transformers handling relatively…

Machine Learning · Computer Science 2024-02-15 Yongchao Zhou , Uri Alon , Xinyun Chen , Xuezhi Wang , Rishabh Agarwal , Denny Zhou