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This paper introduces BioAgent Bench, a benchmark dataset and an evaluation suite designed for measuring the performance and robustness of AI agents in common bioinformatics tasks. The benchmark contains curated end-to-end tasks (e.g.,…

Artificial Intelligence · Computer Science 2026-05-08 Dionizije Fa , Marko Culjak , Bruno Pandza , Mateo Cupic

Automatic Post-Editing (APE) is the task of automatically identifying and correcting errors in the Machine Translation (MT) outputs. We propose a repair-filter-use methodology that uses an APE system to correct errors on the target side of…

Computation and Language · Computer Science 2023-12-19 Akshay Batheja , Sourabh Deoghare , Diptesh Kanojia , Pushpak Bhattacharyya

Benchmarks are central to measuring the capabilities of large language models and guiding model development, yet widespread data leakage from pretraining corpora undermines their validity. Models can match memorized content rather than…

Computation and Language · Computer Science 2025-10-10 Qin Liu , Jacob Dineen , Yuxi Huang , Sheng Zhang , Hoifung Poon , Ben Zhou , Muhao Chen

Assurance Cases (ACs) are an established approach in safety engineering to argue quality claims in a structured way. In the context of quality assurance for Machine Learning (ML)-based software components, ACs are also being discussed and…

Creating fair AI systems is a complex problem that involves the assessment of context-dependent bias concerns. Existing research and programming libraries express specific concerns as measures of bias that they aim to constrain or mitigate.…

Machine Learning · Computer Science 2024-05-30 Emmanouil Krasanakis , Symeon Papadopoulos

PDE-to-solver code generation aims to automatically synthesize executable numerical solvers from partial differential equation (PDE) specifications. This task requires not only understanding the mathematical structure of PDEs, but also…

We present AutoBencher, a declarative framework for automatic benchmark construction, and use it to scalably discover novel insights and vulnerabilities of existing language models. Concretely, given a few desiderata of benchmarks (e.g.,…

Computation and Language · Computer Science 2025-03-03 Xiang Lisa Li , Farzaan Kaiyom , Evan Zheran Liu , Yifan Mai , Percy Liang , Tatsunori Hashimoto

Artifact Evaluation (AE) is essential for ensuring the transparency and reliability of research, closing the gap between exploratory work and real-world deployment is particularly important in cybersecurity, particularly in IoT and CPSs,…

Cryptography and Security · Computer Science 2026-03-16 David Heye , Karl Kindermann , Robin Decker , Johannes Lohmöller , Anastasiia Belova , Sandra Geisler , Klaus Wehrle , Jan Pennekamp

Recent Large Language Model (LLM)-based AutoML systems demonstrate impressive capabilities but face significant limitations such as constrained exploration strategies and a severe execution bottleneck. Exploration is hindered by one-shot…

Artificial Intelligence · Computer Science 2026-04-24 Stepan Kulibaba , Artem Dzhalilov , Roman Pakhomov , Oleg Svidchenko , Alexander Gasnikov , Aleksei Shpilman

Recent advances in large language models (LLMs) for mathematical reasoning have largely focused on tasks with easily verifiable final answers while generating and verifying natural language math proofs remains an open challenge. We identify…

Computation and Language · Computer Science 2026-03-03 Wenjie Ma , Andrei Cojocaru , Neel Kolhe , Bradley Louie , Robin Said Sharif , Haihan Zhang , Vincent Zhuang , Matei Zaharia , Sewon Min

Modern society is increasingly surrounded by, and accustomed to, a wide range of Cyber-Physical Systems (CPS), Internet-of-Things (IoT), and smart devices. They often perform safety-critical functions, e.g., personal medical devices,…

Cryptography and Security · Computer Science 2020-01-14 Ivan De Oliveira Nunes , Karim Eldefrawy , Norrathep Rattanavipanon , Gene Tsudik

Large language models have advanced software engineering automation, yet resolving real-world software issues remains difficult because it requires repository-level reasoning, accurate diagnostics, and strong verification signals. Existing…

Software Engineering · Computer Science 2025-11-21 KeFan Li , Mengfei Wang , Hengzhi Zhang , Zhichao Li , Yuan Yuan , Mu Li , Xiang Gao , Hailong Sun , Chunming Hu , Weifeng Lv

Scaling up executable code data is significant for improving language models' software engineering capability. The intricate nature of the process makes it labor-intensive, time-consuming and expert-knowledge-dependent to build a large…

Software Engineering · Computer Science 2025-10-21 Ruida Hu , Chao Peng , Xinchen Wang , Junjielong Xu , Cuiyun Gao

Accurate parsing of citations is necessary for machine-readable scholarly infrastructure. But, despite sustained interest in this problem, existing evaluation techniques are often not generalizable, based on synthetic data, or not publicly…

Digital Libraries · Computer Science 2026-03-27 Parth Sarin , Juan Pablo Alperin , Adam Buttrick , Dione Mentis

As a seemingly self-explanatory task, problem-solving has been a significant component of science and engineering. However, a general yet concrete formulation of problem-solving itself is missing. With the recent development of AI-based…

Artificial Intelligence · Computer Science 2025-05-08 Qi Liu , Xinhao Zheng , Renqiu Xia , Xingzhi Qi , Qinxiang Cao , Junchi Yan

Recent advances in coding agents suggest rapid progress toward autonomous software development, yet existing benchmarks fail to rigorously evaluate the long-horizon capabilities required to build complete software systems. Most prior…

In this paper, we present a novel approach of automated evaluation of programming assignments~(AEPA) the highlight of which is that it automatically identifies multiple solution approaches to the programming question from the set of…

Software Engineering · Computer Science 2021-03-25 Nikhila KN , Sujit Kumar Chakrabarti , Manish Gupta

AI agents powered by large language models exhibit strong reasoning and problem-solving capabilities, enabling them to assist scientific research tasks such as formula derivation and code generation. However, whether these agents can…

This paper presents Deepchecks, a Python library for comprehensively validating machine learning models and data. Our goal is to provide an easy-to-use library comprising of many checks related to various types of issues, such as model…

Formal reasoning and automated theorem proving constitute a challenging subfield of machine learning, in which machines are tasked with proving mathematical theorems using formal languages like Lean. A formal verification system can check…

Artificial Intelligence · Computer Science 2025-11-05 Azim Ospanov , Farzan Farnia , Roozbeh Yousefzadeh