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Clinical information extraction (e.g., 2010 i2b2/VA challenge) usually presents tasks of concept recognition, assertion classification, and relation extraction. Jointly modeling the multi-stage tasks in the clinical domain is an…

Computation and Language · Computer Science 2026-03-10 Fei Cheng , Ribeka Tanaka , Sadao Kurohashi

Document-level relation extraction is a challenging task which requires reasoning over multiple sentences in order to predict relations in a document. In this paper, we pro-pose a joint training frameworkE2GRE(Entity and Evidence Guided…

Computation and Language · Computer Science 2020-08-28 Kevin Huang , Guangtao Wang , Tengyu Ma , Jing Huang

Motivated by the fact that many relations cross the sentence boundary, there has been increasing interest in document-level relation extraction (DocRE). DocRE requires integrating information within and across sentences, capturing complex…

Computation and Language · Computer Science 2022-04-12 John Giorgi , Gary D. Bader , Bo Wang

The next frontier for video generation lies in developing models capable of zero-shot reasoning, where understanding real-world scientific laws is crucial for accurate physical outcome modeling under diverse conditions. However, existing…

Computer Vision and Pattern Recognition · Computer Science 2025-12-03 Lanxiang Hu , Abhilash Shankarampeta , Yixin Huang , Zilin Dai , Haoyang Yu , Yujie Zhao , Haoqiang Kang , Daniel Zhao , Tajana Rosing , Hao Zhang

Keeping track of scientific challenges, advances and emerging directions is a fundamental part of research. However, researchers face a flood of papers that hinders discovery of important knowledge. In biomedicine, this directly impacts…

Large Language Models (LLMs) with agentic web search capabilities show strong potential for tasks requiring real-time information access and complex fact retrieval, yet evaluating such systems remains challenging. We introduce \bench, a…

Information Retrieval · Computer Science 2026-02-17 Yunfan Zhang , Kathleen McKeown , Smaranda Muresan

Materials synthesis is vital for innovations such as energy storage, catalysis, electronics, and biomedical devices. Yet, the process relies heavily on empirical, trial-and-error methods guided by expert intuition. Our work aims to support…

In today's digital world, seeking answers to health questions on the Internet is a common practice. However, existing question answering (QA) systems often rely on using pre-selected and annotated evidence documents, thus making them…

Computation and Language · Computer Science 2024-04-15 Juraj Vladika , Florian Matthes

Objective: Automatic text summarization tools can help users in the biomedical domain to access information efficiently from a large volume of scientific literature and other sources of text documents. In this paper, we propose a…

Information Retrieval · Computer Science 2018-11-26 Milad Moradi , Nasser Ghadiri

Autonomous AI research agents aim to accelerate scientific discovery by automating the research pipeline, from hypothesis generation to peer review. However, existing benchmarks rarely test a fundamental bottleneck: whether Large Language…

Machine Learning · Computer Science 2026-05-29 Sy-Tuyen Ho , Minghui Liu , Huy Nghiem , Furong Huang

Traditional fixed test sets fall short in evaluating open-ended capabilities of foundation models. To address this, we propose ONEBench(OpeN-Ended Benchmarking), a new testing paradigm that consolidates individual evaluation datasets into a…

Machine Learning · Computer Science 2025-06-18 Adhiraj Ghosh , Sebastian Dziadzio , Ameya Prabhu , Vishaal Udandarao , Samuel Albanie , Matthias Bethge

Language model benchmarks are pervasive and computationally-efficient proxies for real-world performance. However, many recent works find that benchmarks often fail to predict real utility. Towards bridging this gap, we introduce benchmark…

Artificial Intelligence · Computer Science 2026-05-28 Marco Gutierrez , Xinyi Leng , Hannah Cyberey , Jonathan Richard Schwarz , Ahmed Alaa , Thomas Hartvigsen

Automating the recognition of outcomes reported in clinical trials using machine learning has a huge potential of speeding up access to evidence necessary in healthcare decision-making. Prior research has however acknowledged inadequate…

Computation and Language · Computer Science 2022-03-15 Micheal Abaho , Danushka Bollegala , Paula R Williamson , Susanna Dodd

The rapid advancement of large language models (LLMs) has opened new boundaries in the extraction and synthesis of medical knowledge, particularly within evidence synthesis. This paper reviews the state-of-the-art applications of LLMs in…

Learning multimodal representations involves integrating information from multiple heterogeneous sources of data. It is a challenging yet crucial area with numerous real-world applications in multimedia, affective computing, robotics,…

Autonomous agents are increasingly expected to support scientific research, and recent benchmarks report progress in code repair and autonomous experimentation. However, these evaluations typically assume a pre-configured execution…

Software Engineering · Computer Science 2026-03-12 Yubang Wang , Chenxi Zhang , Bowen Chen , Zezheng Huai , Zihao Dai , Xinchi Chen , Yuxin Wang , Yining Zheng , Jingjing Gong , Xipeng Qiu

Currently, Medical Subject Headings (MeSH) are manually assigned to every biomedical article published and subsequently recorded in the PubMed database to facilitate retrieving relevant information. With the rapid growth of the PubMed…

Computation and Language · Computer Science 2022-03-15 Xindi Wang , Robert E. Mercer , Frank Rudzicz

Automatic fact verification has become an increasingly popular topic in recent years and among datasets the Fact Extraction and VERification (FEVER) dataset is one of the most popular. In this work we present BEVERS, a tuned baseline system…

Computation and Language · Computer Science 2023-03-31 Mitchell DeHaven , Stephen Scott

Despite the remarkable progress of Vision-Language Models (VLMs) in adopting "Thinking-with-Images" capabilities, accurately evaluating the authenticity of their reasoning process remains a critical challenge. Existing benchmarks mainly…

Computer Vision and Pattern Recognition · Computer Science 2026-01-21 Xuchen Li , Xuzhao Li , Renjie Pi , Shiyu Hu , Jian Zhao , Jiahui Gao

Medical text embedding models are foundational to a wide array of healthcare applications, ranging from clinical decision support and biomedical information retrieval to medical question answering, yet they remain hampered by two critical…

Computation and Language · Computer Science 2025-08-07 Mohammad Khodadad , Ali Shiraee Kasmaee , Mahdi Astaraki , Hamidreza Mahyar
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