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We introduce an architecture for processing signals supported on hypergraphs via graph neural networks (GNNs), which we call a Hyper-graph Expansion Neural Network (HENN), and provide the first bounds on the stability and transferability…

Machine Learning · Computer Science 2022-12-14 Mikhail Hayhoe , Hans Riess , Victor M. Preciado , Alejandro Ribeiro

Heterogeneous graph neural networks (HeteGNNs) have demonstrated strong abilities to learn node representations by effectively extracting complex structural and semantic information in heterogeneous graphs. Most of the prevailing HeteGNNs…

Machine Learning · Computer Science 2025-05-08 Hong Jin , Kaicheng Zhou , Jie Yin , Lan You , Zhifeng Zhou

Graph neural networks (GNNs) have been widely used in representation learning on graphs and achieved superior performance in tasks such as node classification. However, analyzing heterogeneous graph of different types of nodes and links…

Machine Learning · Computer Science 2021-01-08 Shin-woo Park , Byung Jun Bae , Jinyoung Yeo , Seung-won Hwang

To improve the performance of Graph Neural Networks (GNNs), Graph Structure Learning (GSL) has been extensively applied to reconstruct or refine original graph structures, effectively addressing issues like heterophily, over-squashing, and…

Machine Learning · Computer Science 2024-11-13 Yilun Zheng , Zhuofan Zhang , Ziming Wang , Xiang Li , Sitao Luan , Xiaojiang Peng , Lihui Chen

Graph neural networks (GNNs) have become a standard paradigm for graph representation learning, yet their message passing mechanism implicitly assumes that messages can be represented by source node embeddings, an assumption that fails in…

Artificial Intelligence · Computer Science 2026-03-02 Dawei Cheng , Wenjun Wang , Mingjian Guang

Graph-based anomaly detection is currently an important research topic in the field of graph neural networks (GNNs). We find that in graph anomaly detection, the homophily distribution differences between different classes are significantly…

Machine Learning · Computer Science 2024-03-18 Rui Zhang , Dawei Cheng , Xin Liu , Jie Yang , Yi Ouyang , Xian Wu , Yefeng Zheng

Graph neural networks emerge as a promising modeling method for applications dealing with datasets that are best represented in the graph domain. In specific, developing recommendation systems often require addressing sparse structured data…

Machine Learning · Computer Science 2020-08-03 Dom Huh

Imbalanced node classification widely exists in real-world networks where graph neural networks (GNNs) are usually highly inclined to majority classes and suffer from severe performance degradation on classifying minority class nodes.…

Artificial Intelligence · Computer Science 2023-05-01 Jie Liu , Mengting He , Guangtao Wang , Nguyen Quoc Viet Hung , Xuequn Shang , Hongzhi Yin

Predicting genetic perturbations enables the identification of potentially crucial genes prior to wet-lab experiments, significantly improving overall experimental efficiency. Since genes are the foundation of cellular life, building gene…

Quantitative Methods · Quantitative Biology 2025-05-09 Changxi Chi , Jun Xia , Jingbo Zhou , Jiabei Cheng , Chang Yu , Stan Z. Li

Heterogeneous graphs are ubiquitous in real-world applications because they can represent various relationships between different types of entities. Therefore, learning embeddings in such graphs is a critical problem in graph machine…

Machine Learning · Computer Science 2024-04-02 Yue Zhang , Yuntian He , Saket Gurukar , Srinivasan Parthasarathy

Heterogeneous Graph Neural Networks (HGNNs) leverage diverse semantic relationships in Heterogeneous Graphs (HetGs) and have demonstrated remarkable learning performance in various applications. However, current distributed GNN training…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-21 Yuchen Zhong , Junwei Su , Chuan Wu , Minjie Wang

This study presents a hierarchical mining framework for high-dimensional imbalanced data, leveraging a depth graph model to address the inherent performance limitations of conventional approaches in handling complex, high-dimensional data…

Machine Learning · Computer Science 2025-02-07 Yijiashun Qi , Quanchao Lu , Shiyu Dou , Xiaoxuan Sun , Muqing Li , Yankaiqi Li

Self-supervised learning has shown its promising capability in graph representation learning in recent work. Most existing pre-training strategies usually choose the popular Graph neural networks (GNNs), which can be seen as a special form…

Machine Learning · Computer Science 2023-06-16 Yilin Ding , Zhen Liu , Hao Hao

Graph Neural Networks (GNNs), which generalize deep neural networks to graph-structured data, have drawn considerable attention and achieved state-of-the-art performance in numerous graph related tasks. However, existing GNN models mainly…

Machine Learning · Computer Science 2019-12-30 Zhen Zhang , Jiajun Bu , Martin Ester , Jianfeng Zhang , Chengwei Yao , Zhi Yu , Can Wang

Brain connectivity alternations associated with brain disorders have been widely reported in resting-state functional imaging (rs-fMRI) and diffusion tensor imaging (DTI). While many dual-modal fusion methods based on graph neural networks…

Computer Vision and Pattern Recognition · Computer Science 2024-11-14 Feiyu Yin , Yu Lei , Siyuan Dai , Wenwen Zeng , Guoqing Wu , Liang Zhan , Jinhua Yu

Graph neural networks (GNNs) have become a workhorse approach for learning from data defined over irregular domains, typically by implicitly assuming that the data structure is represented by a homophilic graph. However, recent works have…

Machine Learning · Computer Science 2024-09-16 Samuel Rey , Madeline Navarro , Victor M. Tenorio , Santiago Segarra , Antonio G. Marques

Graphs with heterophily, where adjacent nodes carry different labels, are prevalent in real-world applications, from social networks to molecular interactions. However, existing spectral Graph Neural Network (GNN) approaches tailored for…

Machine Learning · Computer Science 2026-05-13 Md Sazzad Hossen , Avimanyu Sahoo

Graph Neural Networks (GNNs) have been widely applied to various fields due to their powerful representations of graph-structured data. Despite the success of GNNs, most existing GNNs are designed to learn node representations on the fixed…

Machine Learning · Computer Science 2021-06-14 Seongjun Yun , Minbyul Jeong , Sungdong Yoo , Seunghun Lee , Sean S. Yi , Raehyun Kim , Jaewoo Kang , Hyunwoo J. Kim

Graph Neural Networks (GNNs) excel at relational reasoning but face two persistent challenges: the lack of interpretable attribution for heterogeneous node types, and the computational overhead of message passing over large, noisy graphs.…

Machine Learning · Computer Science 2026-05-12 Seungwoo Kum

In recent years, Graph Neural Networks (GNNs) have achieved remarkable success in tasks such as node classification, link prediction, and graph representation learning. However, they remain susceptible to biases that can arise not only from…

Machine Learning · Computer Science 2026-04-06 Mahdi Tavassoli Kejani , Fadi Dornaika , Charlotte Laclau , Jean-Michel Loubes