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Background and Objective: Deep learning enables tremendous progress in medical image analysis. One driving force of this progress are open-source frameworks like TensorFlow and PyTorch. However, these frameworks rarely address issues…

Image and Video Processing · Electrical Eng. & Systems 2021-04-29 Alain Jungo , Olivier Scheidegger , Mauricio Reyes , Fabian Balsiger

The analysis of experimental results with Python often requires writing many code scripts which all need access to the same set of functions. In a common field of research, this set will be nearly the same for many users. The qspec Python…

Computational Physics · Physics 2025-03-18 Patrick Müller , Wilfried Nörtershäuser

Uncertainty quantification using Bayesian methods is a growing area of research. Bayesian model mixing (BMM) is a recent development which combines the predictions from multiple models such that each model's best qualities are preserved in…

Nuclear Theory · Physics 2023-11-01 Kevin Ingles , Dananjaya Liyanage , Alexandra C. Semposki , John C. Yannotty

As a star orbits the center of its host galaxy, the trajectory is encompassed within a 3D toroid. The orbit probes all points in this toroid, unless its orbital frequencies exhibit integer ratios (commensurate frequencies), in which case a…

Astrophysics of Galaxies · Physics 2025-05-22 Subhadeep Sarkar , Michael S. Petersen

Optimization on manifolds is a class of methods for optimization of an objective function, subject to constraints which are smooth, in the sense that the set of points which satisfy the constraints admits the structure of a differentiable…

Mathematical Software · Computer Science 2020-09-03 James Townsend , Niklas Koep , Sebastian Weichwald

Quality assurance and condition assessment of concrete structures is an important topic world-wide due to the ageing infrastructure and increasing traffic demands. Common topics include, but are not limited to, localisation of rebar or…

Computed Tomography (CT) is an imaging technique where information about an object are collected at different angles (called projections or scans). Then the cross-sectional image showing the internal structure of the slice is produced by…

Image and Video Processing · Electrical Eng. & Systems 2022-09-07 Zhengchun Liu , Rajkumar Kettimuthu , Ian Foster

This paper reports the development of a Python Non-Uniform Fast Fourier Transform (PyNUFFT) package, which accelerates non-Cartesian image reconstruction on heterogeneous platforms. Scientific computing with Python encompasses a mature and…

Medical Physics · Physics 2017-10-10 Jyh-Miin Lin

Python has become the de-facto language for training deep neural networks, coupling a large suite of scientific computing libraries with efficient libraries for tensor computation such as PyTorch or TensorFlow. However, when models are used…

Machine Learning · Computer Science 2021-04-02 Zachary DeVito , Jason Ansel , Will Constable , Michael Suo , Ailing Zhang , Kim Hazelwood

Cosmic ray muon tomography is a novel technology to detect high-Z material. A prototype of TUMUTY with 73.6 cm x 73.6 cm large scale position sensitive MRPC detectors has been developed and is introduced in this paper. Three test kits have…

Instrumentation and Detectors · Physics 2021-09-03 Xuewu Wang , Ming Zeng , Zhi Zeng , Yi Wang , Ziran Zhao , Xiaoguang Yue , Zhifei Luo , Hengguan Yi , Baihui Yu , Jianping Cheng

Muon radiography often referred to as muography, is an imaging technique that uses freely available cosmic-ray muons to study the interior structure of natural or man-made large-scale objects. The amount of multidisciplinary applications of…

In scientific imaging, deep learning has become a pivotal tool for image analytics. However, handling large volumetric datasets, which often exceed the memory capacity of standard GPUs, require special attention when subjected to deep…

Computer Vision and Pattern Recognition · Computer Science 2024-08-28 Petrus Zwart

This paper describes XNMT, the eXtensible Neural Machine Translation toolkit. XNMT distin- guishes itself from other open-source NMT toolkits by its focus on modular code design, with the purpose of enabling fast iteration in research and…

NLP in the age of monolithic large language models is approaching its limits in terms of size and information that can be handled. The trend goes to modularization, a necessary step into the direction of designing smaller sub-networks and…

Muon tomography (MT), based on atmospheric cosmic rays, is a promising technique suitable for nondestructive imaging of the internal structures of mountains. This method uses the measured flux distribution after attenuation, combined with…

Instrumentation and Detectors · Physics 2022-12-27 Bin Zhang , Zhe Wang , Shaomin Chen

QMetro++ is a Python package that provides a set of tools for identifying optimal estimation protocols that maximize quantum Fisher information (QFI). Optimization can be performed for arbitrary configurations of input states,…

Quantum Physics · Physics 2026-02-04 Piotr Dulian , Stanisław Kurdziałek , Rafał Demkowicz-Dobrzański

This paper discusses the design and implementation of a Python-based toolset to aid in assessing the response of the UK's Advanced Gas Reactor nuclear power stations to earthquakes. The seismic analyses themselves are carried out with a…

Computational Engineering, Finance, and Science · Computer Science 2014-12-22 Steve Brasier , Fred Pollard

In current electronic structure research endeavors such as warm dense matter or machine learning applications, efficient development necessitates non-monolithic software, providing an extendable and flexible interface. The open-source idea…

Computational Physics · Physics 2025-01-17 Wanja Timm Schulze , Sebastian Schwalbe , Kai Trepte , Stefanie Gräfe

The development of small-angle scattering tensor tomography has enabled the study of anisotropic nanostructures in a volume-resolved manner. It is of great value to have reconstruction methods that can handle many different nanostructural…

Materials Science · Physics 2024-03-22 Leonard C. Nielsen , Paul Erhart , Manuel Guizar-Sicairos , Marianne Liebi

Distributed, large-scale quantum computing will need architectures that combine matter-based qubits with photonic links, but today's software stacks target either gate-based chips or linear-optical devices in isolation. We introduce Optyx,…