English
Related papers

Related papers: Scaling Neural-Network-Based Molecular Dynamics wi…

200 papers

Molecular dynamics simulations have emerged as a potent tool for investigating the physical properties and kinetic behaviors of materials at the atomic scale, particularly in extreme conditions. Ab initio accuracy is now achievable with…

Molecular-scale computation is crucial for smart materials and nanoscale devices, yet creating single-molecule systems capable of complex computations remains challenging. We present a theoretical framework for a single-molecule computer…

Statistical Mechanics · Physics 2024-10-01 Zhongmin Zhang , Zhiyue Lu

In recent years, significant progress has been made in the development of machine learning potentials (MLPs) for atomistic simulations with applications in many fields from chemistry to materials science. While most current MLPs are based…

Chemical Physics · Physics 2023-05-19 Tsz Wai Ko , Jonas A. Finkler , Stefan Goedecker , Jörg Behler

Molecular dynamics (MD) simulations employing classical force fields constitute the cornerstone of contemporary atomistic modeling in chemistry, biology, and materials science. However, the predictive power of these simulations is only as…

Chemical Physics · Physics 2018-09-26 Stefan Chmiela , Huziel E. Sauceda , Klaus-Robert Müller , Alexandre Tkatchenko

Machine learning techniques including neural networks are popular tools for materials and chemical scientists with applications that may provide viable alternative methods in the analysis of structure and energetics of systems ranging from…

Statistical Mechanics · Physics 2022-03-02 James Andrews , Olga Gkountouna , Estela Blaisten-Barojas

Electron spin qubits in quantum dot devices are promising for scalable quantum computing. However, architectural support is currently hindered by the lack of realistic and performant simulation methods for real devices. Physics-based tools…

Mesoscale and Nanoscale Physics · Physics 2025-09-04 Shize Che , Junyu Zhou , Seong Woo Oh , Jonathan Hess , Noah Johnson , Mridul Pushp , Robert Spivey , Anthony Sigillito , Gushu Li

Computational Fluid Dynamics (CFD) is a hugely important subject with applications in almost every engineering field, however, fluid simulations are extremely computationally and memory demanding. Towards this end, we present Lat-Net, a…

Machine Learning · Statistics 2017-05-26 Oliver Hennigh

Spiking neural networks (SNNs) are a promising paradigm for energy-efficient event-driven computation, but large-scale SNN execution remains challenging because sparse spike communication and synchronization can dominate runtime. Existing…

Hardware Architecture · Computer Science 2026-05-27 Muhammad Ihsan Al Hafiz , Artur Podobas

Predicting and understanding the chaotic dynamics in complex systems is essential in various applications. However, conventional approaches, whether full-scale simulations or small-scale omissions, fail to offer a comprehensive solution.…

Computational Physics · Physics 2024-03-28 Pengyu Lai , Jing Wang , Rui Wang , Dewu Yang , Haoqi Fei , Hui Xu

Achieving a balance between computational speed, prediction accuracy, and universal applicability in molecular simulations has been a persistent challenge. This paper presents substantial advancements in the TorchMD-Net software, a pivotal…

We develop and experimentally demonstrate a methodology for a full molecular frame quantum tomography (MFQT) of dynamical polyatomic systems. We exemplify this approach through the complete characterization of an electronically…

Unraveling the dynamical motions of biomolecules is essential for bridging their structure and function, yet it remains a major computational challenge. Molecular dynamics (MD) simulation provides a detailed depiction of biomolecular…

Biomolecules · Quantitative Biology 2025-09-17 Allan dos Santos Costa , Manvitha Ponnapati , Dana Rubin , Tess Smidt , Joseph Jacobson

Long-context supervised fine-tuning (Long-SFT) plays a vital role in enhancing the performance of large language models (LLMs) on long-context tasks. To smoothly adapt LLMs to long-context scenarios, this process typically entails training…

Machine Learning · Computer Science 2025-12-16 Hongtao Xu , Wenting Shen , Yuanxin Wei , Ang Wang , Guo Runfan , Tianxing Wang , Yong Li , Mingzhen Li , Weile Jia

Deploying deep neural networks on edge devices is often limited by the memory traffic and compute cost of dense linear operators. While quaternion neural networks improve parameter efficiency by coupling multiple channels through Hamilton…

Computer Vision and Pattern Recognition · Computer Science 2026-01-12 Vladimir Frants , Sos Agaian , Karen Panetta

We propose a hybrid deterministic and stochastic approach to achieve extended time scales in atomistic simulations that combines the strengths of molecular dynamics (MD) and Monte Carlo (MC) simulations in an easy-to-implement way. The…

Materials Science · Physics 2011-10-18 Pratyush Tiwary , Axel van de Walle

Recently, Graph Neural Network based Force Field (GNNFF) models are widely used in Molecular Dynamics (MD) simulation, which is one of the most cost-effective means in semiconductor material research. However, even such models provide high…

Machine Learning · Computer Science 2025-02-19 Yujie Zeng , Wenlong He , Ihor Vasyltsov , Jiaxin Wei , Ying Zhang , Lin Chen , Yuehua Dai

The extended Lagrangian molecular dynamics (XLMD) method provides a useful framework for reducing the computational cost of a class of molecular dynamics simulations with constrained latent variables. The XLMD method relaxes the constraints…

Numerical Analysis · Mathematics 2020-10-16 Dong An , Lin Lin , Michael Lindsey

Massively parallel computer architectures create new opportunities for the performance of long-timescale molecular dynamics (MD) simulations. Here, we introduce the path-accelerated molecular dynamics (PAMD) method that takes advantage of…

Computational Physics · Physics 2021-01-11 Jorge L. Rosa-Raíces , Bin Zhang , Thomas F. Miller

Recent studies have demonstrated that near-data processing (NDP) is an effective technique for improving performance and energy efficiency of data-intensive workloads. However, leveraging NDP in realistic systems with multiple memory…

Hardware Architecture · Computer Science 2018-12-05 Hyojong Kim , Ramyad Hadidi , Lifeng Nai , Hyesoon Kim , Nuwan Jayasena , Yasuko Eckert , Onur Kayiran , Gabriel H. Loh

Recent work has shown how to train Convolutional Neural Networks (CNNs) rapidly on large image datasets, then transfer the knowledge gained from these models to a variety of tasks. Following [Radford 2017], in this work, we demonstrate…

Machine Learning · Computer Science 2018-08-14 Raul Puri , Robert Kirby , Nikolai Yakovenko , Bryan Catanzaro