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Edge detection (ED) remains a fundamental task in computer vision, yet its performance is often hindered by the ambiguous nature of non-edge pixels near object boundaries. The widely adopted Weighted Binary Cross-Entropy (WBCE) loss treats…
Injecting external domain-specific knowledge (e.g., UMLS) into pretrained language models (LMs) advances their capability to handle specialised in-domain tasks such as biomedical entity linking (BEL). However, such abundant expert knowledge…
Named entity recognition (NER) is a fundamental component in many applications, such as Web Search and Voice Assistants. Although deep neural networks greatly improve the performance of NER, due to the requirement of large amounts of…
With the rapid expansion of unstructured clinical texts in electronic health records (EHRs), clinical named entity recognition (NER) has become a crucial technique for extracting medical information. However, traditional supervised models…
Clinical studies often require understanding elements of a patient's narrative that exist only in free text clinical notes. To transform notes into structured data for downstream use, these elements are commonly extracted and normalized to…
Named Entity Recognition (NER) is a core natural language processing task in which pre-trained language models have shown remarkable performance. However, standard benchmarks like CoNLL 2003 do not address many of the challenges that…
Named entity recognition (NER) has been one of the essential preliminary steps in modern NLP applications. This report focuses on implementing the NER task on finetuning two pretrained models: (i) an encoder-only model (BERT) with a simple…
Automated segmentation of multiple sclerosis (MS) lesions using multicontrast magnetic resonance (MR) images improves efficiency and reproducibility compared to manual delineation, with deep learning (DL) methods achieving state-of-the-art…
In this paper, we propose an efficient parallelization strategy for boundary element method (BEM) solvers that perform the electromagnetic analysis of structures with lossy conductors. The proposed solver is accelerated with the adaptive…
Domain-specific Named Entity Recognition (NER), whose goal is to recognize domain-specific entities and their categories, provides an important support for constructing domain knowledge graphs. Currently, deep learning-based methods are…
Many recent named entity recognition (NER) studies criticize flat NER for its non-overlapping assumption, and switch to investigating nested NER. However, existing nested NER models heavily rely on training data annotated with nested…
Medical image segmentation is vital for diagnosis, treatment planning, and disease monitoring but is challenged by complex factors like ambiguous edges and background noise. We introduce EEMS, a new model for segmentation, combining an…
This paper proposes a novel active boundary loss for semantic segmentation. It can progressively encourage the alignment between predicted boundaries and ground-truth boundaries during end-to-end training, which is not explicitly enforced…
One of the most urgent problems is the overcrowding in emergency departments (EDs), caused by an aging population and rising healthcare costs. Patient dispositions have become more complex as a result of the strain on hospital…
We propose two neural network architectures for nested named entity recognition (NER), a setting in which named entities may overlap and also be labeled with more than one label. We encode the nested labels using a linearized scheme. In our…
Named Entity Recognition (NER) is a critical task in natural language processing, yet it remains particularly challenging for discontinuous entities. The primary difficulty lies in text segmentation, as traditional methods often missegment…
Tool wear monitoring is crucial for quality control and cost reduction in manufacturing processes, of which drilling applications are one example. In this paper, we present a U-Net based semantic image segmentation pipeline, deployed on…
Entity matching (EM) is the most critical step for entity resolution (ER). While current deep learningbased methods achieve very impressive performance on standard EM benchmarks, their realworld application performance is much frustrating.…
Large language models (LLMs) have demonstrated dominating performance in many NLP tasks, especially on generative tasks. However, they often fall short in some information extraction tasks, particularly those requiring domain-specific…
Causal relation extraction of biomedical entities is one of the most complex tasks in biomedical text mining, which involves two kinds of information: entity relations and entity functions. One feasible approach is to take relation…