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System dynamics (SD) is an effective approach for helping reveal the temporal behavior of complex systems. Although there have been recent developments in expanding SD to include systems' spatial dependencies, most applications have been…

Computational Engineering, Finance, and Science · Computer Science 2015-06-03 Christian Neuwirth , Angela Peck , Slobodan Simonovic

Spatially extended population dynamics models that incorporate intrinsic noise serve as case studies for the role of fluctuations and correlations in biological systems. Including spatial structure and stochastic noise in predator-prey…

Statistical Mechanics · Physics 2018-01-09 Ulrich Dobramysl , Mauro Mobilia , Michel Pleimling , Uwe C. Täuber

In recent years, we are seeing the formulation and use of elaborate and complex models in ecological studies. The questions related to the efficient, systematic and error-proof exploration of parameter spaces are of great importance to…

Quantitative Methods · Quantitative Biology 2015-07-08 André Chalom , Paulo Inácio de Knegt López de Prado

The processes in nonequilibrium dissipative media caused by coherent structure formation and lead to the complicated dynamics are of interest for nonlinear physics. Here we consider a model of the flow of interacting electronics patterns.…

chao-dyn · Physics 2008-02-03 E. S. Mchedlova , D. I. Trubetskov

The functioning of an organ such as the brain emerges from interactions between its constituent parts. Further, this interaction is not immutable in time but rather unfolds in a succession of patterns, thereby allowing the brain to adapt to…

Neurons and Cognition · Quantitative Biology 2021-06-02 Emmanuelle Tognoli , Daniela Benites , J. A. Scott Kelso

Accurate predictions and representations of plant growth patterns in simulated and controlled environments are important for addressing various challenges in plant phenomics research. This review explores various works on state-of-the-art…

Quantitative Methods · Quantitative Biology 2025-07-17 Mohamed Debbagh , Shangpeng Sun , Mark Lefsrud

Transformations to create more sustainable social-ecological systems are urgently needed. Structural change is a feature of transformations of social-ecological systems that is of critical importance but is little understood. Here, we…

Adaptation and Self-Organizing Systems · Physics 2017-04-21 Steven J. Lade , Örjan Bodin , Jonathan F. Donges , Elin Enfors Kautsky , Diego Galafassi , Per Olsson , Maja Schlüter

In this paper, we investigate the emergence of a predator-prey model with Beddington-DeAngelis-type functional response and reaction-diffusion. We derive the conditions for Hopf and Turing bifurcation on the spatial domain. Based on the…

Populations and Evolution · Quantitative Biology 2008-01-08 Weiming Wang , Lei Zhang , Yakui Xue , Zhen Jin

When modeling geostatistical or areal data, spatial structure is commonly accommodated via a covariance function for the former and a neighborhood structure for the latter. In both cases the resulting spatial structure is a consequence of…

Methodology · Statistics 2015-04-20 Garritt L. Page , Fernando A. Quintana

These notes introduce the theory of susceptibilities as developed in [arXiv:2504.18274, arXiv:2601.12703] for interpreting neural networks. The susceptibility of an observable $\phi$ to a data perturbation is defined as a derivative of a…

Machine Learning · Computer Science 2026-05-11 Chris Elliott , Daniel Murfet

In this work, we consider the spatial-temporal multi-species competition model. A mathematical model is described by a coupled system of nonlinear diffusion-reaction equations. We use a finite volume approximation with semi-implicit time…

Numerical Analysis · Mathematics 2022-09-08 Maria Vasilyeva , Youwen Wang , Sergei Stepanov , Alexey Sadovski

In this study, we investigate the dynamics of a spatial and non spatial prey-predator interaction model that includes the following: (i) fear effect incorporated in prey birth rate; (ii) group defence of prey against predators; and (iii)…

Populations and Evolution · Quantitative Biology 2023-11-07 Shivam Yadav , Jai Prakash Tripathi , Shrichand Bhuria , Satish Kumar Tiwari , Deepak Tripathi , Vandana Tiwari , Ranjit Kumar Upadhyay , Yun Kang

Systems biology models are useful models of complex biological systems that may require a large amount of experimental data to fit each model's parameters or to approximate a likelihood function. These models range from a few to thousands…

Quantitative Methods · Quantitative Biology 2024-07-12 Vincent D. Zaballa , Elliot E. Hui

Front dynamics modeled by a reaction-diffusion equation are studied under the influence of spatio-temporal structured noises. An effective deterministic model is analytical derived where the noise parameters, intensity, correlation time and…

Statistical Mechanics · Physics 2009-11-07 Miguel A. Santos , J. M. Sancho

We study the mechanisms of pattern formation for vegetation dynamics in water-limited regions. Our analysis is based on a set of two partial differential equations (PDEs) of reaction-diffusion type for the biomass and water and one ordinary…

Dynamical Systems · Mathematics 2023-03-24 Konstantinos Spiliotis , Lucia Russo , Francesco Giannino , Constantinos Siettos

Discrete-time fractional-order dynamical systems (DT-FODS) have found innumerable applications in the context of modeling spatiotemporal behaviors associated with long-term memory. Applications include neurophysiological signals such as…

Optimization and Control · Mathematics 2021-10-05 Sarthak Chatterjee , Sérgio Pequito

In a spatial-temporal model, structural change and/or spatial heterogeneity can easily affect estimation of parameters. Following the spatial-temporal model in [1], we develop a nonparametric procedure for test-ing the presence of…

Methodology · Statistics 2021-07-07 Ruby Anne E. Lemence , Erniel B. Barrios

The spatiotemporal pattern formation is studied in the catalytic carbon monoxide oxidation reaction that takes into account the diffusion processes over the Pt(110) surface, which may contain structurally different areas. These areas are…

Statistical Mechanics · Physics 2018-06-27 I. S. Bzovska , I. M. Mryglod

The distributions of species lifetimes and species in space are related, since species with good local survival chances have more time to colonize new habitats and species inhabiting large areas have higher chances to survive local…

Populations and Evolution · Quantitative Biology 2019-02-18 Tobias Rogge , David Jones , Barbara Drossel , Korinna T. Allhoff

We address the problem of learning the dynamics of an unknown non-parametric system linking a target and a feature time series. The feature time series is measured on a sparse and irregular grid, while we have access to only a few points of…

Machine Learning · Statistics 2023-06-01 Linus Bleistein , Adeline Fermanian , Anne-Sophie Jannot , Agathe Guilloux
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