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Computing subgraph frequencies is a fundamental task that lies at the core of several network analysis methodologies, such as network motifs and graphlet-based metrics, which have been widely used to categorize and compare networks from…

Data Structures and Algorithms · Computer Science 2021-12-30 Pedro Ribeiro , Pedro Paredes , Miguel E. P. Silva , David Aparicio , Fernando Silva

RNA plays a pivotal role in translating genetic instructions into functional outcomes, underscoring its importance in biological processes and disease mechanisms. Despite the emergence of numerous deep learning approaches for RNA,…

Quantitative Methods · Quantitative Biology 2024-12-13 Yuchen Ren , Zhiyuan Chen , Lifeng Qiao , Hongtai Jing , Yuchen Cai , Sheng Xu , Peng Ye , Xinzhu Ma , Siqi Sun , Hongliang Yan , Dong Yuan , Wanli Ouyang , Xihui Liu

Entity Matching (EM)--the task of determining whether two data records refer to the same real-world entity--is a core task in data integration. Recent advances in deep learning have set a new standard for EM, particularly through…

Databases · Computer Science 2026-03-18 Nicholas Pulsone , Roee Shraga , Gregory Goren

Malware is becoming increasingly complex and widespread, making it essential to develop more effective and timely detection methods. Traditional static analysis often fails to defend against modern threats that employ code obfuscation,…

Machine Learning · Computer Science 2025-09-19 Wadduwage Shanika Perera , Haodi Jiang

As general purpose vision models get increasingly effective at a wide set of tasks, it is imperative that they be consistent across the tasks they support. Inconsistent AI models are considered brittle and untrustworthy by human users and…

Computer Vision and Pattern Recognition · Computer Science 2024-02-23 Adyasha Maharana , Amita Kamath , Christopher Clark , Mohit Bansal , Aniruddha Kembhavi

Coordinate-based networks have emerged as a powerful tool for 3D representation and scene reconstruction. These networks are trained to map continuous input coordinates to the value of a signal at each point. Still, current architectures…

Computer Vision and Pattern Recognition · Computer Science 2022-03-29 David B. Lindell , Dave Van Veen , Jeong Joon Park , Gordon Wetzstein

Sampling multiple responses is a common way to improve LLM output quality, but it comes at the cost of additional computation. The key challenge is deciding when to stop generating new samples to balance accuracy gains against efficiency.…

Machine Learning · Computer Science 2025-10-21 Guangya Wan , Zixin Stephen Xu , Sasa Zorc , Manel Baucells , Mengxuan Hu , Hao Wang , Sheng Li

Recently, the increasing use of deep reinforcement learning for flow control problems has led to a new area of research, focused on the coupling and the adaptation of the existing algorithms to the control of numerical fluid dynamics…

Computational Physics · Physics 2024-04-19 Jonathan Viquerat , Philippe Meliga , Pablo Jeken , Elie Hachem

Counting the frequency of small subgraphs is a fundamental technique in network analysis across various domains, most notably in bioinformatics and social networks. The special case of triangle counting has received much attention. Getting…

Social and Information Networks · Computer Science 2016-11-01 Ali Pinar , C. Seshadhri , V. Vishal

Modern automated microscopy faces a fundamental discovery challenge: in many systems, the most important scientific information does not reside in the immediately visible image features, but in the target space of sequentially acquired…

Understanding the structure and dynamics of biological networks is one of the important challenges in system biology. In addition, increasing amount of experimental data in biological networks necessitate the use of efficient methods to…

Artificial Intelligence · Computer Science 2012-07-17 Mohammadreza Keyvanpour , Fereshteh Azizani

Quantization is a widely used compression technique for reducing the memory and computation costs of large pre-trained models. A key challenge in per-channel post-training quantization (PTQ) is selecting appropriate scaling factors to…

Machine Learning · Computer Science 2026-02-18 Shihao Zhang , Rayan Saab

AEC drawings encode geometry and semantics through symbols, layout conventions, and dense annotation, yet it remains unclear whether modern multimodal and vision-language models can reliably interpret this graphical language. We present…

Artificial Intelligence · Computer Science 2026-01-09 Aleksei Kondratenko , Mussie Birhane , Houssame E. Hsain , Guido Maciocci

Despite the success of automated machine learning (AutoML), which aims to find the best design, including the architecture of deep networks and hyper-parameters, conventional AutoML methods are computationally expensive and hardly provide…

Machine Learning · Computer Science 2023-05-25 Shirley Wu , Jiaxuan You , Jure Leskovec , Rex Ying

Subgraph counting is a fundamental task that underpins several network analysis methodologies, including community detection and graph two-sample tests. Counting subgraphs is a computationally intensive problem. Substantial research has…

Combinatorics · Mathematics 2025-11-19 Feng Yu , Mingao Yuan

The issue of bias (i.e., systematic unfairness) in machine learning models has recently attracted the attention of both researchers and practitioners. For the graph mining community in particular, an important goal toward algorithmic…

Human-Computer Interaction · Computer Science 2022-10-18 Agapi Rissaki , Bruno Scarone , David Liu , Aditeya Pandey , Brennan Klein , Tina Eliassi-Rad , Michelle A. Borkin

As machine learning models and autonomous agents are increasingly deployed in high-stakes, real-world domains such as healthcare, security, finance, and robotics, the need for transparent and trustworthy explanations has become critical. To…

Artificial Intelligence · Computer Science 2025-05-29 Haishi Bai , Jozo Dujmovic , Jianwu Wang

This paper introduces BeaCon, a novel tool for the automated generation of adjustable container security policies. Unlike prior approaches, BeaCon leverages dynamic analysis to simulate realistic environments, uncovering container execution…

Cryptography and Security · Computer Science 2025-12-02 Haney Kang , Eduard Marin , Myoungsung You , Diego Perino , Seungwon Shin , Jinwoo Kim

Subgraph matching is the problem of determining the presence and location(s) of a given query graph in a large target graph. Despite being an NP-complete problem, the subgraph matching problem is crucial in domains ranging from network…

Machine Learning · Computer Science 2020-10-28 Rex , Ying , Zhaoyu Lou , Jiaxuan You , Chengtao Wen , Arquimedes Canedo , Jure Leskovec

Large language models internalize a structural trade-off between truthfulness and obsequious flattery, emerging from reward optimization that conflates helpfulness with polite submission. This latent bias, known as sycophancy, manifests as…

Computation and Language · Computer Science 2026-05-19 Sanskar Pandey , Ruhaan Chopra , Angkul Puniya , Sohom Pal
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