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Related papers: Towards A Universal Graph Structural Encoder

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Large Language Models (LLMs) have revolutionized the fields of computer vision (CV) and natural language processing (NLP). One of the most notable advancements of LLMs is that a single model is trained on vast and diverse datasets spanning…

Machine Learning · Computer Science 2024-06-25 Haihong Zhao , Aochuan Chen , Xiangguo Sun , Hong Cheng , Jia Li

Autoencoders are effective deep learning models that can function as generative models and learn latent representations for downstream tasks. The use of graph autoencoders - with both encoder and decoder implemented as message passing…

Machine Learning · Computer Science 2025-03-04 Magnus Cunow , Gerrit Großmann

Graph neural networks (GNNs) have shown their superiority in modeling graph data. Owing to the advantages of federated learning, federated graph learning (FGL) enables clients to train strong GNN models in a distributed manner without…

Machine Learning · Computer Science 2022-11-24 Yue Tan , Yixin Liu , Guodong Long , Jing Jiang , Qinghua Lu , Chengqi Zhang

The success of large pretrained Transformers is closely tied to tokenizers, which convert raw input into discrete symbols. Extending these models to graph-structured data remains a significant challenge. In this work, we introduce a graph…

Machine Learning · Computer Science 2026-03-13 Zeyuan Guo , Enmao Diao , Cheng Yang , Chuan Shi

Graph structure expression plays a vital role in distinguishing various graphs. In this work, we propose a Structure-Sensitive Graph Dictionary Embedding (SS-GDE) framework to transform input graphs into the embedding space of a graph…

Machine Learning · Computer Science 2023-06-21 Guangbu Liu , Tong Zhang , Xudong Wang , Wenting Zhao , Chuanwei Zhou , Zhen Cui

Graph machine learning has been widely explored in various domains, such as community detection, transaction analysis, and recommendation systems. In these applications, anomaly detection plays an important role. Recently, studies have…

Machine Learning · Computer Science 2025-11-21 Wei Herng Choong , Jixing Liu , Ching-Yu Kao , Philip Sperl

Graph self-supervised learning (SSL), including contrastive and generative approaches, offers great potential to address the fundamental challenge of label scarcity in real-world graph data. Among both sets of graph SSL techniques, the…

Machine Learning · Computer Science 2023-04-12 Zhenyu Hou , Yufei He , Yukuo Cen , Xiao Liu , Yuxiao Dong , Evgeny Kharlamov , Jie Tang

To develop a preliminary understanding towards Graph Foundation Models, we study the extent to which pretrained Graph Neural Networks can be applied across datasets, an effort requiring to be agnostic to dataset-specific features and their…

Graph translation is very promising research direction and has a wide range of potential real-world applications. Graph is a natural structure for representing relationship and interactions, and its translation can encode the intrinsic…

Machine Learning · Computer Science 2021-03-17 Tianxiang Zhao , Xianfeng Tang , Xiang Zhang , Suhang Wang

Graph masked autoencoders (GMAE) have emerged as a significant advancement in self-supervised pre-training for graph-structured data. Previous GMAE models primarily utilize a straightforward random masking strategy for nodes or edges during…

Machine Learning · Computer Science 2024-04-25 Chuang Liu , Yuyao Wang , Yibing Zhan , Xueqi Ma , Dapeng Tao , Jia Wu , Wenbin Hu

Recently, Transformers for graph representation learning have become increasingly popular, achieving state-of-the-art performance on a wide-variety of graph datasets, either alone or in combination with message-passing graph neural networks…

Machine Learning · Computer Science 2024-05-07 Ayush Garg

Inspired by the remarkable success of foundation models in language and vision, Graph Foundation Models (GFMs) hold significant promise for broad applicability across diverse graph tasks and domains. However, existing GFMs struggle with…

Machine Learning · Computer Science 2025-11-11 Haonan Yuan , Qingyun Sun , Junhua Shi , Xingcheng Fu , Bryan Hooi , Jianxin Li , Philip S. Yu

Constructing transferable descriptors for conformation representation of molecular and biological systems finds numerous applications in drug discovery, learning-based molecular dynamics, and protein mechanism analysis. Geometric graph…

Machine Learning · Computer Science 2024-10-30 Zihan Pengmei , Zhengyuan Shen , Zichen Wang , Marcus Collins , Huzefa Rangwala

A fundamental challenge in graph learning is understanding how models generalize to new, unseen graphs. While synthetic benchmarks offer controlled settings for analysis, existing approaches are confined to single-graph, transductive…

Machine Learning · Computer Science 2026-03-03 Louis Van Langendonck , Guillermo Bernárdez , Nina Miolane , Pere Barlet-Ros

Recent graph-to-text models generate text from graph-based data using either global or local aggregation to learn node representations. Global node encoding allows explicit communication between two distant nodes, thereby neglecting graph…

Computation and Language · Computer Science 2020-06-23 Leonardo F. R. Ribeiro , Yue Zhang , Claire Gardent , Iryna Gurevych

Graph Neural Networks (GNNs) are a powerful tool for machine learning on graphs.GNNs combine node feature information with the graph structure by recursively passing neural messages along edges of the input graph. However, incorporating…

Machine Learning · Computer Science 2019-11-15 Rex Ying , Dylan Bourgeois , Jiaxuan You , Marinka Zitnik , Jure Leskovec

Graph classification is a pivotal challenge in machine learning, especially within the realm of graph-based data, given its importance in numerous real-world applications such as social network analysis, recommendation systems, and…

Machine Learning · Computer Science 2024-07-03 Bowen Zhang , Zhichao Huang , Genan Dai , Guangning Xu , Xiaomao Fan , Hu Huang

Graph representation learning has attracted lots of attention recently. Existing graph neural networks fed with the complete graph data are not scalable due to limited computation and memory costs. Thus, it remains a great challenge to…

Machine Learning · Computer Science 2020-11-24 Yizhu Jiao , Yun Xiong , Jiawei Zhang , Yao Zhang , Tianqi Zhang , Yangyong Zhu

Graph neural networks are powerful architectures for structured datasets. However, current methods struggle to represent long-range dependencies. Scaling the depth or width of GNNs is insufficient to broaden receptive fields as larger GNNs…

Machine Learning · Computer Science 2022-01-24 Zhanghao Wu , Paras Jain , Matthew A. Wright , Azalia Mirhoseini , Joseph E. Gonzalez , Ion Stoica

Research on Graph Structure Learning (GSL) provides key insights for graph-based clustering, yet current methods like Graph Neural Networks (GNNs), Graph Attention Networks (GATs), and contrastive learning often rely heavily on the original…

Machine Learning · Computer Science 2025-05-21 Jingyun Zhang , Hao Peng , Li Sun , Guanlin Wu , Chunyang Liu , Zhengtao Yu