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Related papers: Molecular Learning Dynamics

200 papers

This paper explores the potential of Lagrangian duality for learning applications that feature complex constraints. Such constraints arise in many science and engineering domains, where the task amounts to learning optimization problems…

Machine Learning · Computer Science 2020-04-07 Ferdinando Fioretto , Pascal Van Hentenryck , Terrence WK Mak , Cuong Tran , Federico Baldo , Michele Lombardi

Diffusive molecular dynamics is a novel model for materials with atomistic resolution that can reach diffusive time scales. The main ideas of diffusive molecular dynamics are to first minimize an approximate variational Gaussian free energy…

Numerical Analysis · Mathematics 2015-06-09 Gideon Simpson , Mitchell Luskin , David J. Srolovitz

The dominant paradigms for video prediction rely on opaque transition models where neither the equations of motion nor the underlying physical quantities of the system are easily inferred. The equations of motion, as defined by Newton's…

Machine Learning · Computer Science 2020-10-27 Christine Allen-Blanchette , Sushant Veer , Anirudha Majumdar , Naomi Ehrich Leonard

The goal of this contribution is to introduce the Hamiltonian formalism of theoretical mechanics for analysing motion in generic linear and non-linear dynamical systems, including particle accelerators. This framework allows the derivation…

Accelerator Physics · Physics 2024-02-27 Yannis Papaphilippou

Molecular dynamics simulation is used to investigate the crystallization of a classical two-dimensional electron system, in which electrons interact with the Coulomb repulsion. From the positional and the orientational correlation…

Condensed Matter · Physics 2009-10-31 Satoru Muto , Hideo Aoki

We have developed a new data-driven paradigm for the rapid inference, modeling and simulation of the physics of transport phenomena by deep learning. Using conditional generative adversarial networks (cGAN), we train models for the direct…

Machine Learning · Computer Science 2017-09-11 Amir Barati Farimani , Joseph Gomes , Vijay S. Pande

The equations of classical mechanics can be used to model the time evolution of countless physical systems, from the astrophysical to the atomic scale. Accurate numerical integration requires small time steps, which limits the computational…

Chemical Physics · Physics 2026-03-09 Filippo Bigi , Johannes Spies , Michele Ceriotti

A conventional derivation of motion equations in mechanics and field equations in field theory is based on the principle of least action with a proper Lagrangian. With a time-independent Lagrangian, a function of coordinates and velocities…

Classical Physics · Physics 2015-05-20 Nikolay A. Vinokurov

Extracting governing physical laws from computational or experimental data is crucial across various fields such as fluid dynamics and plasma physics. Many of those physical laws are dissipative due to fluid viscosity or plasma collisions.…

Computational Physics · Physics 2026-02-11 Yubin Lu , Xiaofan Li , Chun Liu , Qi Tang , Yiwei Wang

Differential equations are used in a wide variety of disciplines, describing the complex behavior of the physical world. Analytic solutions to these equations are often difficult to solve for, limiting our current ability to solve complex…

Machine Learning · Computer Science 2022-08-09 Ethan Mills , Alexey Pozdnyakov

The principle of stationary action is a cornerstone of modern physics, providing a powerful framework for investigating dynamical systems found in classical mechanics through to quantum field theory. However, computational neuroscience,…

Neurons and Cognition · Quantitative Biology 2020-10-08 Erik D. Fagerholm , Karl J. Friston , Rosalyn J. Moran , Robert Leech

Diverse many-body systems, from soap bubbles to suspensions to polymers, learn and remember patterns in the drives that push them far from equilibrium. This learning may be leveraged for computation, memory, and engineering. Until now,…

Statistical Mechanics · Physics 2021-10-26 Weishun Zhong , Jacob M. Gold , Sarah Marzen , Jeremy L. England , Nicole Yunger Halpern

The memory kernel for a tagged particle in a fluid, computed from molecular dynamics simulations, decays algebraically as $t^{-3/2}$. We show how the hydrodynamic Basset-Boussinesq force naturally emerges from this long-time tail and…

Computational Physics · Physics 2016-05-11 Dominika Lesnicki , Rodolphe Vuilleumier , Antoine Carof , Benjamin Rotenberg

This article investigates the modeling and control of Lagrangian systems involving non-conservative forces using a hybrid method that does not require acceleration calculations. It focuses in particular on the derivation and identification…

Systems and Control · Electrical Eng. & Systems 2025-12-03 Ibrahim Laiche , Mokrane Boudaoud , Patrick Gallinari , Pascal Morin

We demonstrate that the machine learning of density functionals allows one to determine simultaneously the equilibrium chemical potential across simulation datasets of inhomogeneous classical fluids. Minimization of a loss function based on…

Soft Condensed Matter · Physics 2026-02-11 Florian Sammüller , Matthias Schmidt

Advancements in artificial intelligence call for a deeper understanding of the fundamental mechanisms underlying deep learning. In this work, we propose a theoretical framework to analyze learning dynamics through the lens of dynamical…

Machine Learning · Computer Science 2025-10-13 Yuchen Lin , Yong Zhang , Sihan Feng , Hong Zhao

Recent advances in high-resolution imaging techniques and particle-based simulation methods have enabled the precise microscopic characterization of collective dynamics in various biological and engineered active matter systems. In…

Soft Condensed Matter · Physics 2023-02-14 Rohit Supekar , Boya Song , Alasdair Hastewell , Gary P. T. Choi , Alexander Mietke , Jörn Dunkel

The population dynamics of molecules, cells, and organisms are governed by a number of unknown forces. In the last decade, population dynamics have predominantly been modeled with Wasserstein gradient flows. However, since gradient flows…

Machine Learning · Computer Science 2026-05-19 Vincent Guan , Lazar Atanackovic , Kirill Neklyudov

Modern analog computers are ideally suited to solving large systems of ordinary differential equations at high speed with low energy consumtion and limited accuracy. In this article, we survey N-body physics, applied to a simple water model…

Computational Physics · Physics 2023-09-12 Sven Köppel , Alexandra Krause , Bernd Ulmann

The dynamical equations for particles in the Parrinello-Rahman Molecular Dynamics were compared with the Newton's Second Law. The discrepancy is due to using the in-complete particles' kinetic energy in the Lagrangian.

Materials Science · Physics 2013-11-19 Gang Liu