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Document Question Answering (DocQA) is a very common task. Existing methods using Large Language Models (LLMs) or Large Vision Language Models (LVLMs) and Retrieval Augmented Generation (RAG) often prioritize information from a single…

Machine Learning · Computer Science 2025-03-19 Siwei Han , Peng Xia , Ruiyi Zhang , Tong Sun , Yun Li , Hongtu Zhu , Huaxiu Yao

Generative models have demonstrated considerable potential in software engineering, particularly in tasks such as code generation and debugging. However, their utilization in the domain of code documentation generation remains…

Computation and Language · Computer Science 2024-02-27 Qinyu Luo , Yining Ye , Shihao Liang , Zhong Zhang , Yujia Qin , Yaxi Lu , Yesai Wu , Xin Cong , Yankai Lin , Yingli Zhang , Xiaoyin Che , Zhiyuan Liu , Maosong Sun

Large language models (LLMs) have shown impressive capabilities in code generation. However, because most LLMs are trained on public domain corpora, directly applying them to real-world software development often yields low success rates,…

Artificial Intelligence · Computer Science 2026-03-26 Shuai Wang , Dhasarathy Parthasarathy , Robert Feldt , Yinan Yu

Code review, which aims at ensuring the overall quality and reliability of software, is a cornerstone of software development. Unfortunately, while crucial, Code review is a labor-intensive process that the research community is looking to…

Software Engineering · Computer Science 2024-09-26 Xunzhu Tang , Kisub Kim , Yewei Song , Cedric Lothritz , Bei Li , Saad Ezzini , Haoye Tian , Jacques Klein , Tegawende F. Bissyande

Smart contracts are the backbone of the decentralized web, yet ensuring their functional correctness and security remains a critical challenge. While Large Language Models (LLMs) have shown promise in code generation, they often struggle…

Software Engineering · Computer Science 2026-02-02 Wei Chen , Zhiyuan Peng , Xin Yin , Chao Ni , Chenhao Ying , Bang Xie , Yuan Luo

In this paper we introduce ResearchCodeAgent, a novel multi-agent system leveraging large language models (LLMs) agents to automate the codification of research methodologies described in machine learning literature. The system bridges the…

Software Engineering · Computer Science 2025-05-06 Shubham Gandhi , Dhruv Shah , Manasi Patwardhan , Lovekesh Vig , Gautam Shroff

Recent progress in Large Language Models (LLMs) has drawn attention to their potential for accelerating drug discovery. However, a central problem remains: translating theoretical ideas into robust implementations in the highly specialized…

Machine Learning · Computer Science 2025-03-06 Sizhe Liu , Yizhou Lu , Siyu Chen , Xiyang Hu , Jieyu Zhao , Yingzhou Lu , Yue Zhao

Large language models (LLMs) have enabled remarkable advances in automated task-solving with multi-agent systems. However, most existing LLM-based multi-agent approaches rely on predefined agents to handle simple tasks, limiting the…

Artificial Intelligence · Computer Science 2024-05-01 Guangyao Chen , Siwei Dong , Yu Shu , Ge Zhang , Jaward Sesay , Börje F. Karlsson , Jie Fu , Yemin Shi

Large Language Models (LLMs) have become increasingly integral to enhancing developer productivity, particularly in code generation, comprehension, and repair tasks. However, fine-tuning these models with high-quality, real-world data is…

Software Engineering · Computer Science 2024-12-12 Xiaoyun Liang , Jingyi Ren , Jiayi Qi , Chao Peng , Bo Jiang

Large Language Model (LLM) Agents have demonstrated remarkable capabilities in task automation and intelligent decision-making, driving the widespread adoption of agent development frameworks such as LangChain and AutoGen. However, these…

Artificial Intelligence · Computer Science 2025-10-10 Jiabin Tang , Tianyu Fan , Chao Huang

Creating end-to-end bioinformatics workflows requires diverse domain expertise, which poses challenges for both junior and senior researchers as it demands a deep understanding of both genomics concepts and computational techniques. While…

Automated code documentation is essential for modern software development, providing the contextual grounding that both human developers and coding agents rely on to navigate large codebases. Existing repository-level approaches process…

Software Engineering · Computer Science 2026-05-15 Suyoung Bae , Jaehoon Lee , Changkyu Choi , YunSeok Choi , Jee-Hyong Lee

High-quality annotated data is a cornerstone of modern Natural Language Processing (NLP). While recent methods begin to leverage diverse annotation sources-including Large Language Models (LLMs), Small Language Models (SLMs), and human…

Artificial Intelligence · Computer Science 2025-09-18 Maosheng Qin , Renyu Zhu , Mingxuan Xia , Chenkai Chen , Zhen Zhu , Minmin Lin , Junbo Zhao , Lu Xu , Changjie Fan , Runze Wu , Haobo Wang

Large Language Models (LLMs) have shown promise in automated code generation but typically excel only in simpler tasks such as generating standalone code units. Real-world software development, however, often involves complex code…

Software Engineering · Computer Science 2024-08-12 Kechi Zhang , Jia Li , Ge Li , Xianjie Shi , Zhi Jin

Large language model (LLM)-based multi-agent systems (MAS) have demonstrated exceptional capabilities in solving complex tasks, yet their effectiveness depends heavily on the underlying communication topology that coordinates agent…

Machine Learning · Computer Science 2026-03-23 Hongjiang Chen , Xin Zheng , Yixin Liu , Pengfei Jiao , Shiyuan Li , Huan Liu , Zhidong Zhao , Ziqi Xu , Ibrahim Khalil , Shirui Pan

REST APIs play important roles in enriching the action space of web agents, yet most API-based agents rely on curated and uniform toolsets that do not reflect the complexity of real-world APIs. Building tool-using agents for arbitrary…

Computation and Language · Computer Science 2025-06-26 Xinyi Ni , Haonan Jian , Qiuyang Wang , Vedanshi Chetan Shah , Pengyu Hong

The pace of scientific research, vital for improving human life, is complex, slow, and needs specialized expertise. Meanwhile, novel, impactful research often stems from both a deep understanding of prior work, and a cross-pollination of…

Computation and Language · Computer Science 2025-02-11 Jinheon Baek , Sujay Kumar Jauhar , Silviu Cucerzan , Sung Ju Hwang

The discovery of novel small molecule drugs remains a critical scientific challenge with far-reaching implications for treating diseases and advancing human health. Traditional drug development--especially for small molecule…

Biomolecules · Quantitative Biology 2025-04-01 Bowen Gao , Yanwen Huang , Yiqiao Liu , Wenxuan Xie , Wei-Ying Ma , Ya-Qin Zhang , Yanyan Lan

The exponential growth of academic publications has led to a surge in papers of varying quality, increasing the cost of paper screening. Current approaches either use novelty assessment within general AI Reviewers or repurpose DeepResearch,…

Computation and Language · Computer Science 2026-03-24 Jiajun Hou , Hexuan Deng , Wenxiang Jiao , Xuebo Liu , Xiaopeng Ke , Min Zhang

Training AI models has always been challenging, especially when there is a need for custom models to provide personalized services. Algorithm engineers often face a lengthy process to iteratively develop models tailored to specific business…

Artificial Intelligence · Computer Science 2023-11-27 Haoyuan Li , Hao Jiang , Tianke Zhang , Zhelun Yu , Aoxiong Yin , Hao Cheng , Siming Fu , Yuhao Zhang , Wanggui He
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