Related papers: Faster shortest-path algorithms using the acyclic-…
Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly problem fall into two broad categories -- based on the data structures which…
Graphs are fundamental objects that find widespread applications across computer science and beyond. Graph Theory has yielded deep insights about structural properties of various families of graphs, which are leveraged in the design and…
Recent work has shown that a simple, fast method called Simple Graph Convolution (SGC) (Wu et al., 2019), which eschews deep learning, is competitive with deep methods like graph convolutional networks (GCNs) (Kipf & Welling, 2017) in…
We present a new approach called GR (Graph Reduction) algorithm for searching loop-less k-shortest paths (1st to k-th shortest paths) in a graph based on graph reduction. Let a source vertex and a target vertex of k-shortest paths be v_s…
The all pairs shortest path problem is a fundamental optimization problem in graph theory. We deal with re-calculating the all-pairs shortest path (APSP) matrix after a minor modification of a weighted dense graph, e.g., adding a node,…
In the k-arc connected subgraph problem, we are given a directed graph G and an integer k and the goal is the find a subgraph of minimum cost such that there are at least k-arc disjoint paths between any pair of vertices. We give a simple…
The shortest path problem in graphs is fundamental to AI. Nearly all variants of the problem and relevant algorithms that solve them ignore edge-weight computation time and its common relation to weight uncertainty. This implies that taking…
We consider single-source shortest path algorithms that perform a sequence of relaxation steps whose ordering depends only on the input graph structure and not on its weights or the results of prior steps. Each step examines one edge of the…
In this paper we study the problem of maintaining the strongly connected components of a graph in the presence of failures. In particular, we show that given a directed graph $G=(V,E)$ with $n=|V|$ and $m=|E|$, and an integer value $k\geq…
The maximum common subtree isomorphism problem asks for the largest possible isomorphism between subtrees of two given input trees. This problem is a natural restriction of the maximum common subgraph problem, which is ${\sf NP}$-hard in…
The all pairs shortest path problem (APSP) is one of the foundational problems in computer science. For weighted dense graphs on $n$ vertices, no truly sub-cubic algorithms exist to compute APSP exactly even for undirected graphs. This is…
We study finite-sum nonlinear programs with localized variable coupling encoded by a (hyper)graph. We introduce a graph-compliant decomposition framework that brings message passing into continuous optimization in a rigorous, implementable,…
1-planar graphs are graphs that can be drawn in the plane such that any edge intersects with at most one other edge. Ackerman showed that the edges of a 1-planar graph can be partitioned into a planar graph and a forest, and claims that the…
In this paper, we study the wireline two-unicast-Z communication network over directed acyclic graphs. The two-unicast-Z network is a two-unicast network where the destination intending to decode the second message has apriori side…
The future of main memory appears to lie in the direction of new technologies that provide strong capacity-to-performance ratios, but have write operations that are much more expensive than reads in terms of latency, bandwidth, and energy.…
Compact and I/O-efficient data representations play an important role in efficient algorithm design, as memory bandwidth and latency can present a significant performance bottleneck, slowing the computation by orders of magnitude. While…
The problem of learning a directed acyclic graph (DAG) up to Markov equivalence is equivalent to the problem of finding a permutation of the variables that induces the sparsest graph. Without additional assumptions, this task is known to be…
We address the following general question: given a graph class C on which we can solve Maximum Matching in (quasi) linear time, does the same hold true for the class of graphs that can be modularly decomposed into C ? A major difficulty in…
We show an algorithm that, given an $n$-vertex graph $G$ and a parameter $k$, in time $2^{O(k \log k)} n^{O(1)}$ finds a tree decomposition of $G$ with the following properties: * every adhesion of the tree decomposition is of size at most…
We study the problem of maximizing the number of spanning trees in a connected graph by adding at most $k$ edges from a given candidate edge set. We give both algorithmic and hardness results for this problem: - We give a greedy algorithm…