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Related papers: Neural Encoding and Decoding at Scale

200 papers

Network Embedding (NE) methods, which map network nodes to low-dimensional feature vectors, have wide applications in network analysis and bioinformatics. Many existing NE methods rely only on network structure, overlooking other…

Artificial Intelligence · Computer Science 2019-06-21 Sotiris Kotitsas , Dimitris Pappas , Ion Androutsopoulos , Ryan McDonald , Marianna Apidianaki

Brain encoding and decoding aims to understand the relationship between external stimuli and brain activities, and is a fundamental problem in neuroscience. In this article, we study latent embedding alignment for brain encoding and…

Methodology · Statistics 2026-03-24 Shuoxun Xu , Zhanhao Yan , Lexin Li

Natural behavior consists of dynamics that are both unpredictable, can switch suddenly, and unfold over many different timescales. While some success has been found in building representations of behavior under constrained or simplified…

Machine Learning · Computer Science 2022-06-15 Mehdi Azabou , Michael Mendelson , Maks Sorokin , Shantanu Thakoor , Nauman Ahad , Carolina Urzay , Eva L. Dyer

We propose a novel approach for image segmentation that combines Neural Ordinary Differential Equations (NODEs) and the Level Set method. Our approach parametrizes the evolution of an initial contour with a NODE that implicitly learns from…

Computer Vision and Pattern Recognition · Computer Science 2019-12-30 Rafael Valle , Fitsum Reda , Mohammad Shoeybi , Patrick Legresley , Andrew Tao , Bryan Catanzaro

Brain decoding involves the determination of a subject's cognitive state or an associated stimulus from functional neuroimaging data measuring brain activity. In this setting the cognitive state is typically characterized by an element of a…

Machine Learning · Statistics 2015-04-14 Nicole Croteau , Farouk S. Nathoo , Jiguo Cao , Ryan Budney

In current practice, many image processing tasks are done sequentially (e.g. denoising, dehazing, followed by semantic segmentation). In this paper, we propose a novel multi-task neural network architecture designed for combining sequential…

Computer Vision and Pattern Recognition · Computer Science 2020-05-04 Ilja Gubins , Remco C. Veltkamp

Deep learning models such as convolutional neural net- work have been widely used in 3D biomedical segmentation and achieve state-of-the-art performance. However, most of them often adapt a single modality or stack multiple modalities as…

Computer Vision and Pattern Recognition · Computer Science 2017-04-26 Kuan-Lun Tseng , Yen-Liang Lin , Winston Hsu , Chung-Yang Huang

Multimodal semantic understanding often has to deal with uncertainty, which means the obtained messages tend to refer to multiple targets. Such uncertainty is problematic for our interpretation, including inter- and intra-modal uncertainty.…

Computer Vision and Pattern Recognition · Computer Science 2023-07-21 Yatai Ji , Junjie Wang , Yuan Gong , Lin Zhang , Yanru Zhu , Hongfa Wang , Jiaxing Zhang , Tetsuya Sakai , Yujiu Yang

The transfer of facial expressions from people to 3D face models is a classic computer graphics problem. In this paper, we present a novel, learning-based approach to transferring facial expressions and head movements from images and videos…

Graphics · Computer Science 2021-11-15 Xiao S. Zeng , Surya Dwarakanath , Wuyue Lu , Masaki Nakada , Demetri Terzopoulos

Understanding how explicit theoretical features are encoded in opaque neural systems is a central challenge now common to neuroscience and AI. We introduce Metric Learning Encoding Models (MLEMs) to address this challenge most directly as a…

Computation and Language · Computer Science 2025-11-17 Louis Jalouzot , Christophe Pallier , Emmanuel Chemla , Yair Lakretz

Investigating the mapping between visual stimuli and neural responses in the visual cortex contributes to a deeper understanding of biological visual processing mechanisms. Most existing studies characterize this mapping by training models…

Computational Engineering, Finance, and Science · Computer Science 2025-12-01 Xing Gao , Dazhong Rong , Qinming He

Deep learning models trained on audio-visual data have been successfully used to achieve state-of-the-art performance for emotion recognition. In particular, models trained with multitask learning have shown additional performance…

Image and Video Processing · Electrical Eng. & Systems 2021-02-15 Raghuveer Peri , Srinivas Parthasarathy , Charles Bradshaw , Shiva Sundaram

Fine-tuning pre-trained models on targeted datasets enhances task-specific performance but often comes at the expense of generalization. Model merging techniques, which integrate multiple fine-tuned models into a single multi-task model…

Machine Learning · Computer Science 2025-09-11 Zitao Fang , Guodong DU , Shuyang Yu , Yifei Guo , Yiwei Zhang , Yiyao Cao , Jing Li , Ho-Kin Tang , Sim Kuan Goh

Predicting brain activity in response to naturalistic, multimodal stimuli is a key challenge in computational neuroscience. While encoding models are becoming more powerful, their ability to generalize to truly novel contexts remains a…

Computer Vision and Pattern Recognition · Computer Science 2025-07-28 Hamid Abdollahi , Amir Hossein Mansouri Majoumerd , Amir Hossein Bagheri Baboukani , Amir Abolfazl Suratgar , Mohammad Bagher Menhaj

Visual decoding from brain signals is a key challenge at the intersection of computer vision and neuroscience, requiring methods that bridge neural representations and computational models of vision. A field-wide goal is to achieve…

Encoding models have been used to assess how the human brain represents concepts in language and vision. While language and vision rely on similar concept representations, current encoding models are typically trained and tested on brain…

Computation and Language · Computer Science 2023-05-23 Jerry Tang , Meng Du , Vy A. Vo , Vasudev Lal , Alexander G. Huth

Advanced volumetric imaging methods and genetically encoded activity indicators have permitted a comprehensive characterization of whole brain activity at single neuron resolution in \textit{Caenorhabditis elegans}. The constant motion and…

Quantitative Methods · Quantitative Biology 2022-10-12 Yuxiang Wu , Shang Wu , Xin Wang , Chengtian Lang , Quanshi Zhang , Quan Wen , Tianqi Xu

We present neuron embeddings, a representation that can be used to tackle polysemanticity by identifying the distinct semantic behaviours in a neuron's characteristic dataset examples, making downstream manual or automatic interpretation…

Machine Learning · Computer Science 2024-11-14 Alex Foote

The ongoing exponential rise in recording capacity calls for new approaches for analysing and interpreting neural data. Effective dimensionality has emerged as an important property of neural activity across populations of neurons, yet…

Neurons and Cognition · Quantitative Biology 2021-08-30 Mehrdad Jazayeri , Srdjan Ostojic

Neural encoding and decoding, which aim to characterize the relationship between stimuli and brain activities, have emerged as an important area in cognitive neuroscience. Traditional encoding models, which focus on feature extraction and…

Neurons and Cognition · Quantitative Biology 2019-08-26 Hao Wu , Ziyu Zhu , Jiayi Wang , Nanning Zheng , Badong Chen