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Scientific code is not production software. Scientific code participates in the evaluation of a scientific hypothesis. This imposes specific constraints on the code that are often overlooked in practice. We articulate, with a small example,…

General Literature · Computer Science 2019-04-25 Fabien Benureau , Nicolas Rougier

Standing at the forefront of knowledge dissemination, digital libraries curate vast collections of scientific literature. However, these scholarly writings are often laden with jargon and tailored for domain experts rather than the general…

Computation and Language · Computer Science 2024-08-08 Haining Wang , Jason Clark

Research software is crucial in the research process and the growth of Open Science underscores the importance of accessing research artifacts, like data and code, raising traceability challenges among outputs. While it is a clear principle…

Software Engineering · Computer Science 2025-07-31 Domhnall Carlin , Austen Rainer

Knowledge graphs (KGs) are widely used for representing and organizing structured knowledge in diverse domains. However, the creation and upkeep of KGs pose substantial challenges. Developing a KG demands extensive expertise in data…

Information Retrieval · Computer Science 2023-09-19 Samira Babalou , Sheeba Samuel , Birgitta König-Ries

Reproducibility, traceability, and transparency in testing cyber-physical energy systems are crucial for scientific advancement and cross-laboratory collaboration. Current experimentation and test documentation practices lack formal…

Systems and Control · Electrical Eng. & Systems 2026-04-22 Kai Heussen , Jawad Kazmi , Narges Mehran , Artjoms Obushevs , Terence O'Donnell , Thomas I. Strasser

Big data repositories from online learning platforms such as Massive Open Online Courses (MOOCs) represent an unprecedented opportunity to advance research on education at scale and impact a global population of learners. To date, such…

Software Engineering · Computer Science 2018-08-23 Josh Gardner , Christopher Brooks , Juan Miguel L. Andres , Ryan Baker

Approaches to scientific journal publishing that provide free access to all readers are challenging the standard subscription-based model. But in domains that have a well-functioning system of publicly accessible preprint repositories like…

Physics and Society · Physics 2023-08-02 J. Harnad

Scientific software is essential to scientific innovation and in many ways it is distinct from other types of software. Abandoned (or unmaintained), buggy, and hard to use software, a perception often associated with scientific software can…

Software Engineering · Computer Science 2025-06-23 Addi Malviya Thakur , Reed Milewicz , Mahmoud Jahanshahi , Lavínia Paganini , Bogdan Vasilescu , Audris Mockus

Reproducing scientific analyses is essential for preserving knowledge, building extensible codebases, and deepening researcher understanding - yet the effort often outweighs its academic recognition. We argue that the reproduction of…

High Energy Physics - Phenomenology · Physics 2026-04-22 Joschka Birk , Gregor Kasieczka , Siddharth Mishra-Sharma , Benjamin Nachman , Dennis Noll , Tanvi Wamorkar

As research increasingly relies on computational methods, the reliability of scientific results depends on the quality, reproducibility, and transparency of research software. Ensuring these qualities is critical for scientific integrity…

Software Engineering · Computer Science 2025-10-14 Evan Eisinger , Michael A. Heroux

The ATLAS collaboration defines methods, establishes procedures, and organises advisory groups to manage the publication processes of scientific papers, conference papers, and public notes. All stages are managed through web systems,…

Software repository mining is the foundation for many empirical software engineering studies. The collection and analysis of detailed data can be challenging, especially if data shall be shared to enable replicable research and open science…

Software Engineering · Computer Science 2020-01-07 Alexander Trautsch , Fabian Trautsch , Steffen Herbold , Benjamin Ledel , Jens Grabowski

Analysis pipelines commonly use high-level technologies that are popular when created, but are unlikely to be readable, executable, or sustainable in the long term. A set of criteria is introduced to address this problem: Completeness (no…

Complexity science offers a wide range of measures for quantifying unpredictability, structure, and information. Yet, a systematic conceptual organization of these measures is still missing. We present a unified framework that locates…

Machine Learning · Computer Science 2025-05-13 Nima Dehghani

Applications integrating analysis components require a programmable interface which defines statistical operations independently of any programming language. By separating concerns of scientific computing from application and implementation…

Computation · Statistics 2014-06-19 Jeroen Ooms

Why are some research studies easy to reproduce while others are difficult? Casting doubt on the accuracy of scientific work is not fruitful, especially when an individual researcher cannot reproduce the claims made in the paper. There…

Digital Libraries · Computer Science 2023-08-25 Akhil Pandey Akella , David Koop , Hamed Alhoori

Reproducibility, the ability to recompute results, and replicability, the chances other experimenters will achieve a consistent result, are two foundational characteristics of successful scientific research. Consistent findings from…

Applications · Statistics 2015-06-23 Jeffrey T. Leek , Roger D. Peng

With the goal of uncovering the challenges faced by European AI students during their research endeavors, we surveyed 28 AI doctoral candidates from 13 European countries. The outcomes underscore challenges in three key areas: (1) the…

Computers and Society · Computer Science 2024-08-14 Andrea Hrckova , Jennifer Renoux , Rafael Tolosana Calasanz , Daniela Chuda , Martin Tamajka , Jakub Simko

The reuse of research software is central to research efficiency and academic exchange. The application of software enables researchers with varied backgrounds to reproduce, validate, and expand upon study findings. Furthermore, the…

Scientific peer review increasingly struggles to assess reproducibility at the scale and complexity of modern research output. Evaluating reproducibility requires reconstructing experimental dependencies, methodological choices, data flows,…

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