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We present GridFF, an efficient method for simulating molecules on rigid substrates, derived from techniques used in protein-ligand docking in biochemistry. By projecting molecule-substrate interactions onto precomputed spatial grids with…

Chemical Physics · Physics 2025-08-22 Indranil Mal , Milan Kočí , Paolo Nicolini , Prokop Hapala

In recent times, the use of machine learning in materials design and discovery has aided to accelerate the discovery of innovative materials with extraordinary properties, which otherwise would have been driven by a laborious and…

Materials Science · Physics 2024-08-01 Md Mohaiminul Islam

To tackle the exponentiality associated with NP-hard problems, two paradigms have been proposed. First, Branch & Bound, like Dynamic Programming, achieve efficient exact inference but requires extensive information and analysis about the…

Data Structures and Algorithms · Computer Science 2016-09-13 Julien Weissenberg , Hayko Riemenschneider , Ralf Dragon , Luc Van Gool

Hardware accelerations of deep learning systems have been extensively investigated in industry and academia. The aim of this paper is to achieve ultra-high energy efficiency and performance for hardware implementations of deep neural…

Machine Learning · Computer Science 2018-02-20 Yanzhi Wang , Caiwen Ding , Zhe Li , Geng Yuan , Siyu Liao , Xiaolong Ma , Bo Yuan , Xuehai Qian , Jian Tang , Qinru Qiu , Xue Lin

Smart training set selections procedures enable the reduction of data needs and improves predictive robustness in machine learning problems relevant to chemistry. We introduce Gradient Guided Furthest Point Sampling (GGFPS), a simple…

Machine Learning · Statistics 2025-10-13 Morris Trestman , Stefan Gugler , Felix A. Faber , O. A. von Lilienfeld

Background: We describe an informatics framework for researchers and clinical investigators to efficiently perform parameter sensitivity analysis and auto-tuning for algorithms that segment and classify image features in a large dataset of…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-12-13 George Teodoro , Tahsin Kurc , Luis F. R. Taveira , Alba C. M. A. Melo , Jun Kong , Joel Saltz

Differentiable simulation of soft bodies is a foundation for system identification, trajectory optimization, and Real2Sim transfer. Yet, existing methods such as the differentiable Projective Dynamics (DiffPD) struggle when faced with…

The emergence of artificial intelligence (AI) accelerators like NVIDIA Tensor Cores offers new opportunities to speed up tensor-heavy scientific computations. However, applying them to quantum chemistry is challenging due to strict accuracy…

Chemical Physics · Physics 2026-04-20 Hua Huang , Wenkai Shao , Jeff Hammond

Utilizing optical fibers to detect and pinpoint vibrations, Distributed Optical Fiber Vibration Sensing (DVS) technology provides real-time monitoring and surveillance of wide-reaching areas. This field has been leveraging Convolutional…

Signal Processing · Electrical Eng. & Systems 2023-08-10 Zhongyao Luo , Zhao Ge , Hao Wu , Ming Tang

Modern computing paradigms, such as cloud computing, are increasingly adopting GPUs to boost their computing capabilities primarily due to the heterogeneous nature of AI/ML/deep learning workloads. However, the energy consumption of GPUs is…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-04-29 Shashikant Ilager , Rajeev Muralidhar , Kotagiri Rammohanrao , Rajkumar Buyya

This work presents a novel surface decomposition method for the sensitivity analysis of first-passage dynamic reliability of linear systems subjected to Gaussian random excitations. The method decomposes the sensitivity of first-passage…

Methodology · Statistics 2026-03-09 Jianhua Xian , Sai Hung Cheung , Cheng Su

In this work, we introduce CHIPS-FF (Computational High-Performance Infrastructure for Predictive Simulation-based Force Fields), a universal, open-source benchmarking platform for machine learning force fields (MLFFs). This platform…

Materials Science · Physics 2025-03-20 Daniel Wines , Kamal Choudhary

Industrial soft sensing is crucial for accurate process monitoring through reliable inference of dominant sensor variables. However, developing effective data-driven soft sensor models presents challenges, such as achieving domain…

Machine Learning · Computer Science 2026-01-21 Junn Yong Loo , Hwa Hui Tew , Fang Yu Leong , Ze Yang Ding , Vishnu Monn Baskaran , Chee-Ming Ting , Chee Pin Tan

In this paper, we develop a low-order three-dimensional finite-element solver for fast multiple-case crust deformation analysis on GPU-based systems. Based on a high-performance solver designed for massively parallel CPU based systems, we…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-10-25 Takuma Yamaguchi , Kohei Fujita , Tsuyoshi Ichimura , Muneo Hori , Maddegedara Lalith , Kengo Nakajima

A delayed feedback reservoir (DFR) is a reservoir computing system well-suited for hardware implementations. However, achieving high accuracy in DFRs depends heavily on selecting appropriate hyperparameters. Conventionally, due to the…

Hardware Architecture · Computer Science 2025-04-18 Sosei Ikeda , Hiromitsu Awano , Takashi Sato

Dynamic programming (DP) based algorithms are essential yet compute-intensive parts of numerous bioinformatics pipelines, which typically involve populating a 2-D scoring matrix based on a recursive formula, optionally followed by a…

Hardware Architecture · Computer Science 2024-11-07 Yingqi Cao , Anshu Gupta , Jason Liang , Yatish Turakhia

In this paper, we propose a fast method for crack detection in 3D computed tomography (CT) images. Our approach combines the Maximal Hessian Entry filter and a Deep-First Search algorithm-based technique to strike a balance between…

Image and Video Processing · Electrical Eng. & Systems 2024-11-12 Duc Nguyen , Vsevolod Chernyshev , Vitalii Makogin , Evgeny Spodarev

A Materials Project based open-source Python tool, MPInterfaces, has been developed to automate the high-throughput computational screening and study of interfacial systems. The framework encompasses creation and manipulation of interface…

Despite multiple successful applications of high-throughput computational materials design from first principles, there is a number of factors that inhibit its future adoption. Of particular importance are limited ability to provide high…

Materials Science · Physics 2018-07-17 Protik Das , Mohammad Mohammadi , Timur Bazhirov

Incremental Potential Contact (IPC) is a widely used, robust, and accurate method for simulating complex frictional contact behaviors. However, achieving high efficiency remains a major challenge, particularly as material stiffness…

Graphics · Computer Science 2025-05-05 Kemeng Huang , Xinyu Lu , Huancheng Lin , Taku Komura , Minchen Li