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We share our recent findings in an attempt to train a universal segmentation network for various cell types and imaging modalities. Our method was built on the generalized U-Net architecture, which allows the evaluation of each component…

Computer Vision and Pattern Recognition · Computer Science 2022-08-01 Tianqi Guo , Yin Wang , Luis Solorio , Jan P. Allebach

There has been substantial progress in applying machine learning techniques to classification problems in collider and jet physics. But as these techniques grow in sophistication, they are becoming more sensitive to subtle features of jets…

High Energy Physics - Phenomenology · Physics 2021-02-01 Oz Amram , Cristina Mantilla Suarez

Deep Neural Networks (DNNs) are used in a wide variety of applications. However, as in any software application, DNN-based apps are afflicted with bugs. Previous work observed that DNN bug fix patterns are different from traditional bug fix…

Software Engineering · Computer Science 2021-12-09 Mohammad Wardat , Breno Dantas Cruz , Wei Le , Hridesh Rajan

Recent progress on intelligent fault diagnosis (IFD) has greatly depended on deep representation learning and plenty of labeled data. However, machines often operate with various working conditions or the target task has different…

Signal Processing · Electrical Eng. & Systems 2021-11-23 Zhibin Zhao , Qiyang Zhang , Xiaolei Yu , Chuang Sun , Shibin Wang , Ruqiang Yan , Xuefeng Chen

Learning from positive and unlabeled (PU) data is a setting where the learner only has access to positive and unlabeled samples while having no information on negative examples. Such PU setting is of great importance in various tasks such…

Machine Learning · Computer Science 2022-09-07 Emilio Dorigatti , Jonas Schweisthal , Bernd Bischl , Mina Rezaei

Fully convolutional deep neural networks have been asserted to be fast and precise frameworks with great potential in image segmentation. One of the major challenges in training such networks raises when data is unbalanced, which is common…

Computer Vision and Pattern Recognition · Computer Science 2018-12-17 Seyed Raein Hashemi , Seyed Sadegh Mohseni Salehi , Deniz Erdogmus , Sanjay P. Prabhu , Simon K. Warfield , Ali Gholipour

Acquiring large-scale medical image data, necessary for training machine learning algorithms, is frequently intractable, due to prohibitive expert-driven annotation costs. Recent datasets extracted from hospital archives, e.g., DeepLesion,…

Computer Vision and Pattern Recognition · Computer Science 2020-11-24 Jinzheng Cai , Adam P. Harrison , Youjing Zheng , Ke Yan , Yuankai Huo , Jing Xiao , Lin Yang , Le Lu

Optical coherence tomography (OCT) is widely used for diagnosing and monitoring retinal diseases, such as age-related macular degeneration (AMD). The segmentation of biomarkers such as layers and lesions is essential for patient diagnosis…

Computer Vision and Pattern Recognition · Computer Science 2025-09-26 Botond Fazekas , Guilherme Aresta , Philipp Seeböck , Julia Mai , Ursula Schmidt-Erfurth , Hrvoje Bogunović

Pretrained language models (PLMs) trained on large-scale unlabeled corpus are typically fine-tuned on task-specific downstream datasets, which have produced state-of-the-art results on various NLP tasks. However, the data discrepancy issue…

Computation and Language · Computer Science 2022-03-23 Jiali Zeng , Yufan Jiang , Shuangzhi Wu , Yongjing Yin , Mu Li

Recent developments in the field of deep learning for 3D data have demonstrated promising potential for end-to-end learning directly from point clouds. However, many real-world point clouds contain a large class im-balance due to the…

Computer Vision and Pattern Recognition · Computer Science 2019-06-19 David Griffiths , Jan Boehm

Intelligent diagnosis method based on data-driven and deep learning is an attractive and meaningful field in recent years. However, in practical application scenarios, the imbalance of time-series fault is an urgent problem to be solved.…

Machine Learning · Computer Science 2021-07-15 Xingtai Gui , Jiyang Zhang

Nowadays, we are witnessing an increasing demand in both corporates and academia for exploiting Deep Learning (DL) to solve complex real-world problems. A DL program encodes the network structure of a desirable DL model and the process by…

Software Engineering · Computer Science 2021-07-08 Amin Nikanjam , Houssem Ben Braiek , Mohammad Mehdi Morovati , Foutse Khomh

Recent success of large-scale pre-trained language models crucially hinge on fine-tuning them on large amounts of labeled data for the downstream task, that are typically expensive to acquire. In this work, we study self-training as one of…

Computation and Language · Computer Science 2020-06-30 Subhabrata Mukherjee , Ahmed Hassan Awadallah

Class imbalance poses a challenge for developing unbiased, accurate predictive models. In particular, in image segmentation neural networks may overfit to the foreground samples from small structures, which are often heavily…

Computer Vision and Pattern Recognition · Computer Science 2021-02-23 Zeju Li , Konstantinos Kamnitsas , Ben Glocker

Melanoma is one of the ten most common cancers in the US. Early detection is crucial for survival, but often the cancer is diagnosed in the fatal stage. Deep learning has the potential to improve cancer detection rates, but its…

Computer Vision and Pattern Recognition · Computer Science 2019-05-16 Devansh Bisla , Anna Choromanska , Jennifer A. Stein , David Polsky , Russell Berman

Thyroid nodule classification and segmentation in ultrasound images are crucial for computer-aided diagnosis; however, they face limitations owing to insufficient labeled data. In this study, we proposed a multi-view contrastive…

Computer Vision and Pattern Recognition · Computer Science 2024-02-20 Jian Wang , Xin Yang , Xiaohong Jia , Wufeng Xue , Rusi Chen , Yanlin Chen , Xiliang Zhu , Lian Liu , Yan Cao , Jianqiao Zhou , Dong Ni , Ning Gu

We present an automatic method for joint liver lesion segmentation and classification using a hierarchical fine-tuning framework. Our dataset is small, containing 332 2-D CT examinations with lesion annotated into 3 lesion types: cysts,…

Image and Video Processing · Electrical Eng. & Systems 2019-08-01 Michal Heker , Avi Ben-Cohen , Hayit Greenspan

The goal in label-imbalanced and group-sensitive classification is to optimize relevant metrics such as balanced error and equal opportunity. Classical methods, such as weighted cross-entropy, fail when training deep nets to the terminal…

Machine Learning · Computer Science 2021-11-09 Ganesh Ramachandra Kini , Orestis Paraskevas , Samet Oymak , Christos Thrampoulidis

Cancer is one of the leading causes of death globally, and early diagnosis is crucial for patient survival. Deep learning algorithms have great potential for automatic cancer analysis. Artificial intelligence has achieved high performance…

Image and Video Processing · Electrical Eng. & Systems 2024-04-16 Monika Górka , Daniel Jaworek , Marek Wodzinski

Forensic science heavily relies on analyzing latent fingerprints, which are crucial for criminal investigations. However, various challenges, such as background noise, overlapping prints, and contamination, make the identification process…

Computer Vision and Pattern Recognition · Computer Science 2023-06-02 Andre Brasil Vieira Wyzykowski , Anil K. Jain