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Tree comparison metrics have proven to be an invaluable aide in the reconstruction and analysis of phylogenetic (evolutionary) trees. The path-length distance between trees is a particularly attractive measure as it reflects differences in…

Data Structures and Algorithms · Computer Science 2018-11-05 David Bryant , Celine Scornavacca

We study fully dynamic algorithms for maximum matching. This is a well-studied problem, known to admit several update-time/approximation trade-offs. For instance, it is known how to maintain a 1/2-approximate matching in $\log^{O(1)} n$…

Data Structures and Algorithms · Computer Science 2022-11-15 Soheil Behnezhad

Answering connectivity queries is fundamental to fully dynamic graphs where edges and vertices are inserted and deleted frequently. Existing work proposes data structures and algorithms with worst-case guarantees. We propose a new data…

Data Structures and Algorithms · Computer Science 2022-07-19 Qing Chen , Oded Lachish , Sven Helmer , Michael Böhlen

In this paper, we have developed a fully-dynamic algorithm for maintaining cardinality of maximum-matching in a tree using the construction of top-trees. The time complexities are as follows: 1. Initialization Time: $O(n(log(n)))$ to build…

Data Structures and Algorithms · Computer Science 2009-01-20 Manoj Gupta , Ankit Sharma

An NP-hard graph problem may be intractable for general graphs but it could be efficiently solvable using dynamic programming for graphs with bounded width (or depth or some other structural parameter). Dynamic programming is a well-known…

Data Structures and Algorithms · Computer Science 2019-01-23 Mahdi Belbasi , Martin Fürer

We show that the eccentricities, diameter, radius, and Wiener index of an undirected $n$-vertex graph with nonnegative edge lengths can be computed in time $O(n\cdot \binom{k+\lceil\log n\rceil}{k} \cdot 2^k k^2 \log n)$, where $k$ is the…

Data Structures and Algorithms · Computer Science 2018-05-21 Karl Bringmann , Thore Husfeldt , Måns Magnusson

Conditional lower bounds for dynamic graph problems has received a great deal of attention in recent years. While many results are now known for the fully-dynamic case and such bounds often imply worst-case bounds for the partially dynamic…

Data Structures and Algorithms · Computer Science 2016-05-04 Søren Dahlgaard

Given a dynamic graph subject to insertions and deletions of edges, a natural question is whether the graph presently admits a planar embedding. We give a deterministic fully-dynamic algorithm for general graphs, running in amortized…

Data Structures and Algorithms · Computer Science 2019-12-11 Jacob Holm , Eva Rotenberg

It is shown that every tree of size $n$ over a fixed set of $\sigma$ different ranked symbols can be decomposed (in linear time as well as in logspace) into $O\big(\frac{n}{\log_\sigma n}\big) = O\big(\frac{n \log \sigma}{\log n}\big)$ many…

Data Structures and Algorithms · Computer Science 2015-09-22 Moses Ganardi , Danny Hucke , Artur Jez , Markus Lohrey , Eric Noeth

An algorithm is presented that solves the Minimum Dominating Set problem exactly using polynomial space based on dynamic programming for a tree decomposition. A direct application of dynamic programming based on a tree decomposition would…

Data Structures and Algorithms · Computer Science 2017-11-29 Mahdi Belbasi , Martin Fürer

We present a data structure that we call a Dynamic Representative Set. In its most basic form, it is given two parameters $0< k < n$ and allows us to maintain a representation of a family $\mathcal{F}$ of subsets of $\{1,\ldots,n\}$. It…

Data Structures and Algorithms · Computer Science 2025-12-10 Jesper Nederlof

Many dynamic graph algorithms have an amortized update time, rather than a stronger worst-case guarantee. But amortized data structures are not suitable for real-time systems, where each individual operation has to be executed quickly. For…

Data Structures and Algorithms · Computer Science 2021-03-12 Aaron Bernstein , Sebastian Forster , Monika Henzinger

Treewidth is an important structural graph parameter that quantifies how closely a graph resembles a tree-like structure. It has applications in many algorithmic and combinatorial problems. In this paper, we study the treewidth of outer…

Discrete Mathematics · Computer Science 2025-12-01 Rafał Pyzik

The {\em edit distance} between two ordered trees with vertex labels is the minimum cost of transforming one tree into the other by a sequence of elementary operations consisting of deleting and relabeling existing nodes, as well as…

Data Structures and Algorithms · Computer Science 2010-12-01 Erik D. Demaine , Shay Mozes , Benjamin Rossman , Oren Weimann

It is widely assumed that $O(m+\lg \sigma)$ is the best one can do for finding a pattern of length $m$ in a compacted trie storing strings over an alphabet of size $\sigma$, if one insists on linear-size data structures and deterministic…

Data Structures and Algorithms · Computer Science 2013-02-15 Johannes Fischer , Pawel Gawrychowski

Hypertree decompositions of hypergraphs are a generalization of tree decompositions of graphs. The corresponding hypertree-width is a measure for the cyclicity and therefore tractability of the encoded computation problem. Many NP-hard…

Data Structures and Algorithms · Computer Science 2008-10-12 Georg Gottlob , Marko Samer

Metrics for merge trees that are simultaneously stable, informative, and efficiently computable have so far eluded researchers. We show in this work that it is possible to devise such a metric when restricting merge trees to ordered domains…

Information Retrieval · Computer Science 2022-12-06 Christopher J. Tralie , Zachary Schlamowitz , Jose Arbelo , Antonio I. Delgado , Charley Kirk , Nicholas A. Scoville

In Chordal/Interval Vertex Deletion we ask how many vertices one needs to remove from a graph to make it chordal (respectively: interval). We study these problems under the parameterization by treewidth $tw$ of the input graph $G$. On the…

Data Structures and Algorithms · Computer Science 2025-01-31 Michal Wlodarczyk

A maximal independent set (MIS) can be maintained in an evolving $m$-edge graph by simply recomputing it from scratch in $O(m)$ time after each update. But can it be maintained in time sublinear in $m$ in fully dynamic graphs? We answer…

Data Structures and Algorithms · Computer Science 2018-02-28 Sepehr Assadi , Krzysztof Onak , Baruch Schieber , Shay Solomon

In this paper we introduce a general framework for casting fully dynamic transitive closure into the problem of reevaluating polynomials over matrices. With this technique, we improve the best known bounds for fully dynamic transitive…

Data Structures and Algorithms · Computer Science 2007-05-23 Camil Demetrescu , Giuseppe F. Italiano