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Biophysics is a subject that is spread over many disciplines and transcends the skills and knowledge of the individual student. This makes it challenging both to teach and to learn. Educational materials are described to aid in teaching…

Physics Education · Physics 2015-06-15 J. M. Deutsch

We introduce an open-source toolkit for neural machine translation (NMT) to support research into model architectures, feature representations, and source modalities, while maintaining competitive performance, modularity and reasonable…

Computation and Language · Computer Science 2017-09-13 Guillaume Klein , Yoon Kim , Yuntian Deng , Josep Crego , Jean Senellart , Alexander M. Rush

The ability to represent perturbative expansions of interacting quantum field theories in terms of simple diagrammatic rules has revolutionized calculations in particle physics (and elsewhere). Moreover, these rules are readily automated, a…

General Relativity and Quantum Cosmology · Physics 2024-07-30 Sergio Sevillano Muñoz , Edmund J. Copeland , Peter Millington , Michael Spannowsky

We present an improved version of our program package oneloop which -- written as a package for MAPLE -- solves one-loop Feynman integrals. The package is calculating one-, two- and three-point functions both algebraically and numerically…

High Energy Physics - Phenomenology · Physics 2009-10-30 L. Brücher , J. Franzkowski , D. Kreimer

This is the second part of a three-volume guide to TLUSTY and SYNSPEC. It presents a detailed reference manual for TLUSTY, which contains a detailed description of basic physical assumptions and equations used to model an atmosphere,…

Solar and Stellar Astrophysics · Physics 2017-06-08 Ivan Hubeny , Thierry Lanz

A package for drawing publication-quality Feynman diagrams written in GLE is described.

High Energy Physics - Phenomenology · Physics 2022-11-30 A. G. Grozin

This is a companion Focus Demonstration article to the PyMUSE python package, demonstrating its usage and utilities for VLT/MUSE data analysis, that include a wide range of options for spectra extractions, the creation of different types of…

Instrumentation and Methods for Astrophysics · Physics 2018-03-20 Ismael Pessa , Nicolas Tejos , Cristobal Moya

We present further development and the first public release of our multimodal nested sampling algorithm, called MultiNest. This Bayesian inference tool calculates the evidence, with an associated error estimate, and produces posterior…

Astrophysics · Physics 2011-09-28 F. Feroz , M. P. Hobson , M. Bridges

In this work, the library spinney is presented, which provides an implementation of helicity spinors and related algorithms for the symbolical manipulation program Form. The package is well suited for symbolic amplitude calculations both in…

High Energy Physics - Phenomenology · Physics 2011-08-04 Gavin Cullen , Maciej Koch-Janusz , Thomas Reiter

We present here an installation guide, a hand-on mini-tutorial through examples, and the theoretical foundations of the Hilbert++ code.

Other Computer Science · Computer Science 2009-03-03 Alessandro Mirone

We present an open-source toolkit for neural machine translation (NMT). The new toolkit is mainly based on vaulted Transformer (Vaswani et al., 2017) along with many other improvements detailed below, in order to create a self-contained,…

Computation and Language · Computer Science 2022-03-09 Nguyen Hoang Quan , Nguyen Thanh Dat , Nguyen Hoang Minh Cong , Nguyen Van Vinh , Ngo Thi Vinh , Nguyen Phuong Thai , Tran Hong Viet

This work introduces ParAMS -- a versatile Python package that aims to make parameterization workflows in computational chemistry and physics more accessible, transparent and reproducible. We demonstrate how ParAMS facilitates the parameter…

Chemical Physics · Physics 2021-05-18 Leonid Komissarov , Robert Rüger , Matti Hellström , Toon Verstraelen

We elaborate on the method of differential equations for evaluating Feynman integrals. We focus on systems of equations for master integrals having a linear dependence on the dimensional parameter. For these systems we identify the criteria…

High Energy Physics - Phenomenology · Physics 2015-06-18 Mario Argeri , Stefano Di Vita , Pierpaolo Mastrolia , Edoardo Mirabella , Johannes Schlenk , Ulrich Schubert , Lorenzo Tancredi

Inspired by the work of Feynman, Deutsch, We formally propose the theory of physical computability and accordingly, the physical complexity theory. To achieve this, a framework that can evaluate almost all forms of computation using various…

Computational Physics · Physics 2011-12-06 Huimin Zheng , HaiXing Hu , Nan Wu , Fangmin Song

Many applications in the sciences require numerically stable and computationally efficient evaluation of multivariate polynomials. Finding beneficial representations of polynomials, such as Horner factorisations, is therefore crucial.…

Mathematical Software · Computer Science 2020-07-30 Jannik Michelfeit

This is a series of short teaching papers dealing with specific topics in a standard first-year undergraduate Physics course. ----- Este texto comp\~oe-se de quatro pequenas notas -- independentes entre si -- em que se discutem alguns…

Physics Education · Physics 2007-05-23 Oscar Bolina

This brief code paper presents a new Python-wrapped version of the popular 21cm cosmology simulator, 21cmFAST. The new version, v3+, maintains the same core functionality of previous versions of 21cmFAST, but features a simple and intuitive…

Instrumentation and Methods for Astrophysics · Physics 2020-10-30 Steven G. Murray , Bradley Greig , Andrei Mesinger , Julian B. Muñoz , Yuxiang Qin , Jaehong Park , Catherine A. Watkinson

{\mu}Manager, an open-source microscopy acquisition software, has been an essential tool for many microscopy experiments over the past 15 years, but is not easy to use for experiments in which image acquisition and analysis are closely…

Quantitative Methods · Quantitative Biology 2024-02-12 Henry Pinkard , Nico Stuurman , Laura Waller

Molecular simulation is a scientific tool dealing with challenges in material science and biology. This is reflected in a permanent development and enhancement of algorithms within scientific simulation packages. Here, we present…

Machine learning has been applied to several problems in particle physics research, beginning with applications to high-level physics analysis in the 1990s and 2000s, followed by an explosion of applications in particle and event…

Computational Physics · Physics 2019-05-17 Kim Albertsson , Piero Altoe , Dustin Anderson , John Anderson , Michael Andrews , Juan Pedro Araque Espinosa , Adam Aurisano , Laurent Basara , Adrian Bevan , Wahid Bhimji , Daniele Bonacorsi , Bjorn Burkle , Paolo Calafiura , Mario Campanelli , Louis Capps , Federico Carminati , Stefano Carrazza , Yi-fan Chen , Taylor Childers , Yann Coadou , Elias Coniavitis , Kyle Cranmer , Claire David , Douglas Davis , Andrea De Simone , Javier Duarte , Martin Erdmann , Jonas Eschle , Amir Farbin , Matthew Feickert , Nuno Filipe Castro , Conor Fitzpatrick , Michele Floris , Alessandra Forti , Jordi Garra-Tico , Jochen Gemmler , Maria Girone , Paul Glaysher , Sergei Gleyzer , Vladimir Gligorov , Tobias Golling , Jonas Graw , Lindsey Gray , Dick Greenwood , Thomas Hacker , John Harvey , Benedikt Hegner , Lukas Heinrich , Ulrich Heintz , Ben Hooberman , Johannes Junggeburth , Michael Kagan , Meghan Kane , Konstantin Kanishchev , Przemysław Karpiński , Zahari Kassabov , Gaurav Kaul , Dorian Kcira , Thomas Keck , Alexei Klimentov , Jim Kowalkowski , Luke Kreczko , Alexander Kurepin , Rob Kutschke , Valentin Kuznetsov , Nicolas Köhler , Igor Lakomov , Kevin Lannon , Mario Lassnig , Antonio Limosani , Gilles Louppe , Aashrita Mangu , Pere Mato , Narain Meenakshi , Helge Meinhard , Dario Menasce , Lorenzo Moneta , Seth Moortgat , Mark Neubauer , Harvey Newman , Sydney Otten , Hans Pabst , Michela Paganini , Manfred Paulini , Gabriel Perdue , Uzziel Perez , Attilio Picazio , Jim Pivarski , Harrison Prosper , Fernanda Psihas , Alexander Radovic , Ryan Reece , Aurelius Rinkevicius , Eduardo Rodrigues , Jamal Rorie , David Rousseau , Aaron Sauers , Steven Schramm , Ariel Schwartzman , Horst Severini , Paul Seyfert , Filip Siroky , Konstantin Skazytkin , Mike Sokoloff , Graeme Stewart , Bob Stienen , Ian Stockdale , Giles Strong , Wei Sun , Savannah Thais , Karen Tomko , Eli Upfal , Emanuele Usai , Andrey Ustyuzhanin , Martin Vala , Justin Vasel , Sofia Vallecorsa , Mauro Verzetti , Xavier Vilasís-Cardona , Jean-Roch Vlimant , Ilija Vukotic , Sean-Jiun Wang , Gordon Watts , Michael Williams , Wenjing Wu , Stefan Wunsch , Kun Yang , Omar Zapata
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