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The biggest challenge when using DNA as a storage medium is maintaining its stability. The relative occurrence of Guanine (G) and Cytosine (C) is essential for the longevity of DNA. In addition to that, reverse complementary base pairs…

Information Theory · Computer Science 2023-08-03 NallappaBhavithran G , Selvakumar R

Constrained coding plays a key role in optimizing performance and mitigating errors in applications such as storage and communication, where specific constraints on codewords are required. While non-parametric constraints have been…

Information Theory · Computer Science 2025-05-05 Daniella Bar-Lev , Michael Shlizerman

Synthetic DNA approaches 227.5 exabytes per gram of storage density with stability over millennial timescales. Realising this capacity requires error-correction codes that recover data from substantial synthesis and sequencing errors.…

Information Theory · Computer Science 2026-04-23 James L. Banal

CRC codes have long since been adopted in a vast range of applications. The established notion that they are suitable primarily for error detection can be set aside through use of the recently proposed Guessing Random Additive Noise…

Information Theory · Computer Science 2024-10-28 Wei An , Muriel Médard , Ken R. Duffy

The general trace reconstruction problem seeks to recover an original sequence from its noisy copies independently corrupted by deletions, insertions, and substitutions. This problem arises in applications such as DNA data storage, a…

Machine Learning · Computer Science 2025-07-18 Franziska Weindel , Michael Girsch , Reinhard Heckel

The base station-mobile device communication traffic has dramatically increased recently due to mobile data, which in turn heavily overloaded the underlying infrastructure. To decrease Base Station (BS) interaction, intra-cell communication…

Information Theory · Computer Science 2021-10-04 Elif Haytaoglu , Erdi Kaya , Suayb S. Arslan

Insertion-deletion codes (insdel codes for short) are used for correcting synchronization errors in communications, and in other many interesting fields such as DNA storage, date analysis, race-track memory error correction and language…

Information Theory · Computer Science 2022-06-02 Qinqin Ji , Dabin Zheng , Hao Chen , Xiaoqiang Wang

DNA data storage systems encode digital data into DNA strands, enabling dense and durable storage. Efficient data retrieval depends on coverage depth, a key performance metric. We study the random access coverage depth problem and focus on…

Information Theory · Computer Science 2025-07-29 Şeyma Bodur , Stefano Lia , Hiram H. López , Rati Ludhani , Alberto Ravagnani , Lisa Seccia

Reed-Solomon codes are a classic family of error-correcting codes consisting of evaluations of low-degree polynomials over a finite field on some sequence of distinct field elements. They are widely known for their optimal unique-decoding…

Information Theory · Computer Science 2025-09-01 Omar Alrabiah , Zeyu Guo , Venkatesan Guruswami , Ray Li , Zihan Zhang

We initiate the study of DNA-based distributed storage systems, where information is encoded across multiple DNA data storage containers to achieve robustness against container failures. In this setting, data are distributed over $M$…

Information Theory · Computer Science 2026-02-10 Adi Levy , Roni Con , Eitan Yaakobi , Han Mao Kiah

Regenerating codes are a class of codes proposed for providing reliability of data and efficient repair of failed nodes in distributed storage systems. In this paper, we address the fundamental problem of handling errors and erasures during…

Information Theory · Computer Science 2015-03-20 K. V. Rashmi , Nihar B. Shah , Kannan Ramchandran , P. Vijay Kumar

In this work, we investigate a challenging problem, which has been considered to be an important criterion in designing codewords for DNA computing purposes, namely secondary structure avoidance in single-stranded DNA molecules. In short,…

Information Theory · Computer Science 2023-02-28 Tuan Thanh Nguyen , Kui Cai , Han Mao Kiah , Duc Tu Dao , Kees A. Schouhamer Immink

The short lifespan of traditional data storage media, coupled with an exponential increase in storage demand, has made long-term archival a fundamental problem in the data storage industry and beyond. Consequently, researchers are looking…

Image and Video Processing · Electrical Eng. & Systems 2026-03-06 Xavier Pic , Nimesh Pinnamaneni , Raja Appuswamy

A locally decodable code (LDC) C:{0,1}^k -> {0,1}^n is an error correcting code wherein individual bits of the message can be recovered by only querying a few bits of a noisy codeword. LDCs found a myriad of applications both in theory and…

Computational Complexity · Computer Science 2019-04-26 Tom Gur , Oded Lachish

We consider the problem of constructing codes that can correct deletions that are localized within a certain part of the codeword that is unknown a priori. Namely, the model that we study is when at most $k$ deletions occur in a window of…

Information Theory · Computer Science 2021-05-07 Rawad Bitar , Serge Kas Hanna , Nikita Polyanskii , Ilya Vorobyev

Over the past years, the ever-growing trend on data storage demand, more specifically for "cold" data (rarely accessed data), has motivated research for alternative systems of data storage. Because of its biochemical characteristics,…

Machine Learning · Computer Science 2022-03-21 Xavier Pic , Marc Antonini

Function-correcting codes are a coding framework designed to minimize redundancy while ensuring that specific functions or computations of encoded data can be reliably recovered, even in the presence of errors. The choice of metric is…

Information Theory · Computer Science 2026-02-18 Gyanendra K. Verma , Abhay Kumar Singh

Error-correcting codes are a method for representing data, so that one can recover the original information even if some parts of it were corrupted. The basic idea, which dates back to the revolutionary work of Shannon and Hamming about a…

Information Theory · Computer Science 2026-03-05 Mrinal Kumar , Noga Ron-Zewi

Locally decodable codes (LDC's) are error-correcting codes that allow recovery of individual message indices by accessing only a constant number of codeword indices. For substitution errors, it is evident that LDC's exist -- Hadamard codes…

Information Theory · Computer Science 2023-11-15 Meghal Gupta

Polar codes asymptotically achieve the symmetric capacity of memoryless channels, yet their error-correcting performance under successive-cancellation (SC) decoding for short and moderate length codes is worse than that of other modern…

Information Theory · Computer Science 2015-12-25 Gabi Sarkis , Pascal Giard , Alexander Vardy , Claude Thibeault , Warren J. Gross