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Real-valued functions on geometric data -- such as node attributes on a graph -- can be optimized using descriptors from persistent homology, allowing the user to incorporate topological terms in the loss function. When optimizing a single…

Computational Geometry · Computer Science 2024-09-02 Luis Scoccola , Siddharth Setlur , David Loiseaux , Mathieu Carrière , Steve Oudot

This paper develops a simple method to construct confidence bands, centered at a principal component analysis (PCA) based estimator, for the slope function in a functional linear regression model with a scalar response variable and a…

Statistics Theory · Mathematics 2017-05-02 Masaaki Imaizumi , Kengo Kato

Persistent homology is a fundamental tool in Topological Data Analysis. The associated algebraic structure is the persistence module, a sequence of vector spaces connected by linear maps. Persistence modules admit a complete and…

Algebraic Topology · Mathematics 2026-02-13 R. Gonzalez-Diaz , M. Soriano-Trigueros , A. Torras-Casas

We propose a novel approach for preserving topological structures of the input space in latent representations of autoencoders. Using persistent homology, a technique from topological data analysis, we calculate topological signatures of…

Machine Learning · Computer Science 2021-06-01 Michael Moor , Max Horn , Bastian Rieck , Karsten Borgwardt

The machinery of topological data analysis becomes increasingly popular in a broad range of machine learning tasks, ranging from anomaly detection and manifold learning to graph classification. Persistent homology is one of the key…

We introduce graphcodes, a novel multi-scale summary of the topological properties of a dataset that is based on the well-established theory of persistent homology. Graphcodes handle datasets that are filtered along two real-valued scale…

Algebraic Topology · Mathematics 2024-05-24 Michael Kerber , Florian Russold

The predictions of mean-field electrodynamics can now be probed using direct numerical simulations of random flows and magnetic fields. When modelling astrophysical MHD, it is important to verify that such simulations are in agreement with…

Data Analysis, Statistics and Probability · Physics 2018-09-12 Irina Makarenko , Paul Bushby , Andrew Fletcher , Robin Henderson , Nikolay Makarenko , Anvar Shukurov

Ongoing and future surveys with repeat imaging in multiple bands are producing (or will produce) time-spaced measurements of brightness, resulting in the identification of large numbers of variable sources in the sky. A large fraction of…

Instrumentation and Methods for Astrophysics · Physics 2017-11-29 Abhijit Saha , A. Katherina Vivas

We define persistent homology groups over any set of spaces which have inclusions defined so that the corresponding directed graph between the spaces is acyclic, as well as along any subgraph of this directed graph. This method…

Computational Geometry · Computer Science 2019-06-20 Erin Wolf Chambers , David Letscher

Homography estimation is an important task in computer vision applications, such as image stitching, video stabilization, and camera calibration. Traditional homography estimation methods heavily depend on the quantity and distribution of…

Computer Vision and Pattern Recognition · Computer Science 2021-11-09 Lang Nie , Chunyu Lin , Kang Liao , Shuaicheng Liu , Yao Zhao

Load-sharing systems arise in many different reliability applications, for instance, when modeling tensile strength of fibrous composites in textile industry or lifetimes of redundant technical systems in engineering. Sequential order…

Methodology · Statistics 2025-05-01 Stefan Bedbur , Johann Köhne , Fabian Mies

The persistence barcode is a topological descriptor of data that plays a fundamental role in topological data analysis. Given a filtration of data, the persistence barcode tracks the evolution of its homology groups. In this paper, we…

Computational Geometry · Computer Science 2025-10-14 Tao Hou , Salman Parsa , Bei Wang

In this paper, we introduce multiscale persistent functions for biomolecular structure characterization. The essential idea is to combine our multiscale rigidity functions with persistent homology analysis, so as to construct a series of…

Biomolecules · Quantitative Biology 2016-12-28 Kelin Xia , Zhiming Li , Lin Mu

Spatial transcriptomics studies are becoming increasingly large and commonplace, necessitating simultaneous analysis of a large number of spatially resolved variables. Correspondingly, a diverse range of methodologies have been proposed to…

Quantitative Methods · Quantitative Biology 2025-09-09 James Boyle , Gregory Hamm , Eleanor Williams , Robin JG Hartman , Magnus Soderburg , Ian Henry , Michael Casey

We propose a multi-scale extension of conformal prediction, an approach that constructs prediction sets with finite-sample coverage guarantees under minimal statistical assumptions. Classic conformal prediction relies on a single notion of…

Statistics Theory · Mathematics 2025-02-11 Ali Baheri , Marzieh Amiri Shahbazi

Recently a new feature representation and data analysis methodology based on a topological tool called persistent homology (and its corresponding persistence diagram summary) has started to attract momentum. A series of methods have been…

Computational Geometry · Computer Science 2019-12-13 Qi Zhao , Yusu Wang

Deep learning models have significantly improved prediction accuracy in various fields, gaining recognition across numerous disciplines. Yet, an aspect of deep learning that remains insufficiently addressed is the assessment of prediction…

Machine Learning · Statistics 2024-12-18 Asaf Ben Arie , Malka Gorfine

Persistent homology is a cornerstone of topological data analysis, offering a multiscale summary of topology with robustness to nuisance transformations, such as rotations and small deformations. Persistent homology has seen broad use…

Methodology · Statistics 2025-11-19 Zitian Wu , Arkaprava Roy , Leo L. Duan

We present a robust model predictive control (MPC) framework for linear systems facing bounded parametric uncertainty and bounded disturbances. Our approach deviates from standard MPC formulations by integrating multi-step predictors, which…

Optimization and Control · Mathematics 2023-11-21 Danilo Saccani , Giancarlo Ferrari-Trecate , Melanie N. Zeilinger , Johannes Köhler

Building upon [2308.02636], we investigate the constraining power of persistent homology on cosmological parameters and primordial non-Gaussianity in a likelihood-free inference pipeline utilizing machine learning. We evaluate the ability…

Cosmology and Nongalactic Astrophysics · Physics 2025-09-22 Juan Calles , Jacky H. T. Yip , Gabriella Contardo , Jorge Noreña , Adam Rouhiainen , Gary Shiu