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Persistent homology has been devised as a promising tool for the topological simplification of complex data. However, it is computationally intractable for large data sets. In this work, we introduce multiresolution persistent homology for…

Biomolecules · Quantitative Biology 2015-04-02 Kelin Xia , Zhixiong Zhao , Guo-Wei Wei

Topological Data Analysis has grown in popularity in recent years as a way to apply tools from algebraic topology to large data sets. One of the main tools in topological data analysis is persistent homology. This paper uses undergraduate…

Algebraic Topology · Mathematics 2024-06-26 Cheyne Glass , Elizabeth Vidaurre

In real-world systems, the relationships and connections between components are highly complex. Real systems are often described as networks, where nodes represent objects in the system and edges represent relationships or connections…

Algebraic Topology · Mathematics 2024-06-24 Shen Zhang

Such modern applications of topology as data analysis and digital image analysis have to deal with noise and other uncertainty. In this environment, topological spaces often appear equipped with a real valued function. Persistence is a…

Algebraic Topology · Mathematics 2011-05-02 Peter Saveliev

We introduce a nonparametric way to estimate the global probability density function for a random persistence diagram. Precisely, a kernel density function centered at a given persistence diagram and a given bandwidth is constructed. Our…

Statistics Theory · Mathematics 2018-03-14 Joshua Lee Mike , Vasileios Maroulas

A suitable feature representation that can both preserve the data intrinsic information and reduce data complexity and dimensionality is key to the performance of machine learning models. Deeply rooted in algebraic topology, persistent…

Algebraic Topology · Mathematics 2018-11-02 Chi Seng Pun , Kelin Xia , Si Xian Lee

Persistence diagram (PD) bundles, a generalization of vineyards, were introduced as a way to study the persistent homology of a set of filtrations parameterized by a topological space $B$. In this paper, we present an algorithm for…

Algebraic Topology · Mathematics 2023-09-21 Abigail Hickok

Topological data analysis uses tools from topology -- the mathematical area that studies shapes -- to create representations of data. In particular, in persistent homology, one studies one-parameter families of spaces associated with data,…

Machine Learning · Computer Science 2020-12-01 Guido Montúfar , Nina Otter , Yuguang Wang

In this paper we study multidimensional persistence modules [5,13] via what we call tame functors and noise systems. A noise system leads to a pseudo-metric topology on the category of tame functors. We show how this pseudo-metric can be…

Algebraic Topology · Mathematics 2016-08-16 Martina Scolamiero , Wojciech Chachólski , Anders Lundman , Ryan Ramanujam , Sebastian Öberg

Topological data analysis is becoming increasingly relevant to support the analysis of unstructured data sets. A common assumption in data analysis is that the data set is a sample---not necessarily a uniform one---of some high-dimensional…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Markus Banagl , Filip Sadlo , Heike Leitte

This paper aims to discuss a method of quantifying the 'shape' of data, via a methodology called topological data analysis. The main tool within topological data analysis is persistent homology; this is a means of measuring the shape of…

Algebraic Topology · Mathematics 2022-09-14 Tristan Gowdridge , Nikolaos Devilis , Keith Worden

Confidence bands are confidence sets for an unknown function f, containing all functions within some sup-norm distance of an estimator. In the density estimation, regression, and white noise models, we consider the problem of constructing…

Statistics Theory · Mathematics 2013-02-19 Adam D. Bull

Persistent homology is a method for computing the topological features present in a given data. Recently, there has been much interest in the integration of persistent homology as a computational step in neural networks or deep learning. In…

Machine Learning · Computer Science 2020-11-17 Padraig Corcoran , Bailin Deng

Hyperspectral imaging is a powerful technology that is plagued by large dimensionality. Herein, we explore a way to combat that hindrance via non-contiguous and contiguous (simpler to realize sensor) band grouping for dimensionality…

Image and Video Processing · Electrical Eng. & Systems 2019-05-31 Muhammad Aminul Islam , Derek T. Anderson , John E. Ball , Nicolas H. Younan

A method to apply and visualize persistent homology of time series is proposed. The method captures persistent features in space and time, in contrast to the existing procedures, where one usually chooses one while keeping the other fixed.…

Algebraic Topology · Mathematics 2024-12-17 Martina Flammer , Knut Hüper

A fundamental challenge in multiparameter persistent homology is the absence of a complete and discrete invariant. To address this issue, we propose an enhanced framework that realizes a holistic understanding of a fully commutative…

Algebraic Topology · Mathematics 2023-11-14 Yasuaki Hiraoka , Ken Nakashima , Ippei Obayashi , Chenguang Xu

Persistence diagrams have been widely recognized as a compact descriptor for characterizing multiscale topological features in data. When many datasets are available, statistical features embedded in those persistence diagrams can be…

Algebraic Topology · Mathematics 2017-07-07 Ippei Obayashi , Yasuaki Hiraoka

An Important tool in the field topological data analysis is known as persistent Homology (PH) which is used to encode abstract representation of the homology of data at different resolutions in the form of persistence diagram (PD). In this…

Image and Video Processing · Electrical Eng. & Systems 2022-07-13 Aras Asaad , Dashti Ali , Taban Majeed , Rasber Rashid

The stability of persistent homology has led to wide applications of the persistence diagram as a trusted topological descriptor in the presence of noise. However, with the increasing demand for high-dimension and low-sample-size data…

Statistics Theory · Mathematics 2025-11-04 Yasuaki Hiraoka , Yusuke Imoto , Shu Kanazawa , Enhao Liu

We describe a new methodology for studying persistence of topological features across a family of spaces or point-cloud data sets, called zigzag persistence. Building on classical results about quiver representations, zigzag persistence…

Computational Geometry · Computer Science 2008-12-02 Gunnar Carlsson , Vin de Silva
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