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Although many active scientific codes use modern Fortran, most contemporary scientific software "libraries" are implemented in C and C++. Providing their numerical, algorithmic, or data management features to Fortran codes requires writing…

Software Engineering · Computer Science 2019-07-04 Seth R. Johnson , Andrey Prokopenko , Katherine J. Evans

The introduced package MoebInv contains two CPP libraries for symbolic, numeric and graphical manipulations in non-Euclidean geometry. The first library cycle implements basic geometric operations on cycles, which are the zero sets of…

Computational Geometry · Computer Science 2019-12-17 Vladimir V. Kisil

We describe glsim, a C++ library designed to provide routines to perform basic housekeeping tasks common to a very wide range of simulation programs, such as reading simulation parameters or reading and writing self-describing binary files…

Computational Physics · Physics 2011-07-29 Tomas S. Grigera

We introduce a novel dataset tailored for code generation, aimed at aiding developers in common tasks. Our dataset provides examples that include a clarified intent, code snippets associated, and an average of three related unit tests. It…

Computation and Language · Computer Science 2024-09-26 Nathanaël Beau , Benoît Crabbé

Efficient code retrieval is critical for developer productivity, yet existing benchmarks largely focus on Python and rarely stress-test robustness beyond superficial lexical cues. To address the gap, we introduce an automated pipeline for…

Software Engineering · Computer Science 2026-03-06 Kaicheng Wang , Liyan Huang , Weike Fang , Weihang Wang

HOTTBOX is a Python library for exploratory analysis and visualisation of multi-dimensional arrays of data, also known as tensors. The library includes methods ranging from standard multi-way operations and data manipulation through to…

Mathematical Software · Computer Science 2021-12-02 Ilya Kisil , Giuseppe G. Calvi , Bruno S. Dees , Danilo P. Mandic

This article introduces hinted dictionaries for expressing efficient ordered sets and maps functionally. As opposed to the traditional ordered dictionaries with logarithmic operations, hinted dictionaries can achieve better performance by…

Programming Languages · Computer Science 2022-06-10 Amir Shaikhha , Mahdi Ghorbani , Hesam Shahrokhi

Almost all applications stop scaling at some point; those that don't are seldom performant when considering time to solution on anything but aspirational/unicorn resources. Recognizing these tradeoffs as well as greater user functionality…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-28 Stephen Hudson , Jeffrey Larson , John-Luke Navarro , Stefan M. Wild

At the heart of any finite element simulation is the assembly of matrices and vectors from discrete variational forms. We propose a general interface between problem-specific and general-purpose components of finite element programs. This…

Numerical Analysis · Mathematics 2012-05-15 Martin Sandve Alnæs , Anders Logg , Kent-Andre Mardal , Ola Skavhaug , Hans Petter Langtangen

The new finite state machine package in the mathematics software system SageMath is presented and illustrated by many examples. Several combinatorial problems, in particular digit problems, are introduced, modeled by automata and…

Formal Languages and Automata Theory · Computer Science 2023-06-22 Clemens Heuberger , Daniel Krenn , Sara Kropf

We present Manify, an open-source Python library for non-Euclidean representation learning. Leveraging manifold learning techniques, Manify provides tools for learning embeddings in (products of) non-Euclidean spaces, performing…

Machine Learning · Computer Science 2025-07-18 Philippe Chlenski , Kaizhu Du , Dylan Satow , Raiyan R. Khan , Itsik Pe'er

NUISANCE is an open source C++ framework which facilitates detailed studies of neutrino interaction cross-section models implemented in Monte Carlo neutrino event generators. It provides a host of automated methods to perform comparisons of…

High Energy Physics - Experiment · Physics 2018-06-12 P. Stowell , C. Wret , C. Wilkinson , L. Pickering , S. Cartwright , Y. Hayato , K. Mahn , K. S. McFarland , J. Sobczyk , R. Terri , L. Thompson , M. O. Wascko , Y. Uchida

The maximum clique problem finds applications in computer vision, bioinformatics, and network analysis, many of which involve the construction of correspondence graphs to find similarities between two given objects. cliquematch is a Python…

Mathematical Software · Computer Science 2021-12-03 Gautham Venkatasubramanian

As computational challenges in optimization and statistical inference grow ever harder, algorithms that utilize derivatives are becoming increasingly more important. The implementation of the derivatives that make these algorithms so…

Mathematical Software · Computer Science 2015-09-25 Bob Carpenter , Matthew D. Hoffman , Marcus Brubaker , Daniel Lee , Peter Li , Michael Betancourt

The correctness of complex software depends on the correctness of both the source code and the compilers that generate corresponding binary code. Compilers must do more than preserve the semantics of a single source file: they must ensure…

Programming Languages · Computer Science 2024-09-04 Luke Geeson , James Brotherston , Wilco Dijkstra , Alastair F. Donaldson , Lee Smith , Tyler Sorensen , John Wickerson

We present the Flowgen tool, which generates flowcharts from annotated C++ source code. The tool generates a set of interconnected high-level UML activity diagrams, one for each function or method in the C++ sources. It provides a simple…

Software Engineering · Computer Science 2014-05-14 David A. Kosower , J. J. Lopez-Villarejo

Signals can be interpreted as composed of a rapidly varying component modulated by a slower varying envelope. Identifying this envelope is an essential operation in signal processing, with applications in areas ranging from seismology to…

Sound · Computer Science 2021-10-25 Carlos Tarjano , Valdecy Pereira

Vacillating tableaux are sequences of integer partitions that satisfy specific conditions. The concept of vacillating tableaux stems from the representation theory of the partition algebra and the combinatorial theory of crossings and…

Combinatorics · Mathematics 2023-08-29 Zhanar Berikkyzy , Pamela E. Harris , Anna Pun , Catherine Yan , Chenchen Zhao

Here practical aspects of conducting research via computer simulations are discussed. The following issues are addressed: software engineering, object-oriented software development, programming style, macros, make files, scripts, libraries,…

Condensed Matter · Physics 2009-02-02 Alexander K. Hartmann , Heiko Rieger

mlpy is a Python Open Source Machine Learning library built on top of NumPy/SciPy and the GNU Scientific Libraries. mlpy provides a wide range of state-of-the-art machine learning methods for supervised and unsupervised problems and it is…

Mathematical Software · Computer Science 2012-03-02 Davide Albanese , Roberto Visintainer , Stefano Merler , Samantha Riccadonna , Giuseppe Jurman , Cesare Furlanello