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A normally functioning menstrual cycle requires significant crosstalk between hormones originating in ovarian and brain tissues. Reproductive hormone dysregulation may cause abnormal function and sometimes infertility. The inherent…
Purpose: Surgery scene understanding with tool-tissue interaction recognition and automatic report generation can play an important role in intra-operative guidance, decision-making and postoperative analysis in robotic surgery. However,…
The proliferation of textual data on the Internet presents a unique opportunity for institutions and companies to monitor public opinion about their services and products. Given the rapid generation of such data, the text stream mining…
We report an implementation of a clinical information extraction tool that leverages deep neural network to annotate event spans and their attributes from raw clinical notes and pathology reports. Our approach uses context words and their…
Multimodal (MM) learning is emerging as a promising paradigm in biomedical artificial intelligence (AI) applications, integrating complementary modality, which highlight different aspects of patient health. The scarcity of large…
This work presents our participation in the EvalLLM 2025 challenge on biomedical Named Entity Recognition (NER) and health event extraction in French (few-shot setting). For NER, we propose three approaches combining large language models…
Process model extraction (PME) is a recently emerged interdiscipline between natural language processing (NLP) and business process management (BPM), which aims to extract process models from textual descriptions. Previous process…
Most existing approaches to disfluency detection heavily rely on human-annotated data, which is expensive to obtain in practice. To tackle the training data bottleneck, we investigate methods for combining multiple self-supervised…
Collecting sufficient labelled training data for health and medical problems is difficult (Antropova, et al., 2018). Also, missing values are unavoidable in health and medical datasets and tackling the problem arising from the inadequate…
Clinical notes containing valuable patient information are written by different health care providers with various scientific levels and writing styles. It might be helpful for clinicians and researchers to understand what information is…
Objective: This study quantifies the capabilities of GPT-3.5 and GPT-4 for clinical named entity recognition (NER) tasks and proposes task-specific prompts to improve their performance. Materials and Methods: We evaluated these models on…
Multitask deep learning has been applied to patient outcome prediction from text, taking clinical notes as input and training deep neural networks with a joint loss function of multiple tasks. However, the joint training scheme of multitask…
Linguistic resources such as part-of-speech (POS) tags have been extensively used in statistical machine translation (SMT) frameworks and have yielded better performances. However, usage of such linguistic annotations in neural machine…
We present a novel iterative extraction model, IterX, for extracting complex relations, or templates (i.e., N-tuples representing a mapping from named slots to spans of text) within a document. Documents may feature zero or more instances…
Medical professionals search the published literature by specifying the type of patients, the medical intervention(s) and the outcome measure(s) of interest. In this paper we demonstrate how features encoding syntactic patterns improve the…
Automatic Term Extraction (ATE) identifies domain-specific expressions that are crucial for downstream tasks such as machine translation and information retrieval. Although large language models (LLMs) have significantly advanced various…
Generative pre-trained transformer (GPT) models have shown promise in clinical entity and relation extraction tasks because of their precise extraction and contextual understanding capability. In this work, we further leverage the Unified…
Temporal information extraction from unstructured text is essential for contextualizing events and deriving actionable insights, particularly in the medical domain. We address the task of extracting clinical events and their temporal…
Large language models (LLMs) excel at clinical information extraction but their computational demands limit practical deployment. Knowledge distillation--the process of transferring knowledge from larger to smaller models--offers a…
We propose a new semi-supervised learning method on face-related tasks based on Multi-Task Learning (MTL) and data distillation. The proposed method exploits multiple datasets with different labels for different-but-related tasks such as…