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The order preserving pattern matching (OPPM) problem is, given a pattern string $p$ and a text string $t$, find all substrings of $t$ which have the same relative orders as $p$. In this paper, we consider two variants of the OPPM problem…

Data Structures and Algorithms · Computer Science 2017-07-26 Temma Nakamura , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

A \emph{border} of a word $w$ is a word that is both a non-empty proper prefix and suffix of $w$. If $w$ has a border, then it is said to be \emph{bordered}; otherwise, it is said to be \emph{unbordered}. The main results of this paper are…

Data Structures and Algorithms · Computer Science 2023-08-30 Daniel Gabric

We consider two natural problems about nondeterministic finite automata. First, given such an automaton M of n states, and a length l, does M accept a word of length l? We show that the classic problem of triangle-free graph recognition…

Formal Languages and Automata Theory · Computer Science 2018-02-14 Aaron Potechin , Jeffrey Shallit

Two strings are considered to have parameterized matching when there exists a bijection of the parameterized alphabet onto itself such that it transforms one string to another. Parameterized matching has application in software duplication…

Data Structures and Algorithms · Computer Science 2024-12-03 Apurba Saha , Iftekhar Hakim Kaowsar , Mahdi Hasnat Siyam , M. Sohel Rahman

Deep learning models have become state of the art for natural language processing (NLP) tasks, however deploying these models in production system poses significant memory constraints. Existing compression methods are either lossy or…

Machine Learning · Computer Science 2018-11-05 Anish Acharya , Rahul Goel , Angeliki Metallinou , Inderjit Dhillon

Let $S_{T}(k)$ denote the set of distinct substrings of length $k$ in a string $T$, then the $k$-th substring complexity is defined by its cardinality $|S_{T}(k)|$. Recently, $\delta = \max \{ |S_{T}(k)| / k : k \ge 1 \}$ is shown to be a…

Data Structures and Algorithms · Computer Science 2022-05-26 Akiyoshi Kawamoto , Tomohiro I

In this paper we present algorithms for several string problems in the Congested Clique model. In the Congested Clique model, $n$ nodes (computers) are used to solve some problem. The input to the problem is distributed among the nodes, and…

Data Structures and Algorithms · Computer Science 2025-04-14 Shay Golan , Matan Kraus

Tandem duplication in DNA is the process of inserting a copy of a segment of DNA adjacent to the original position. Motivated by applications that store data in living organisms, Jain {\em et al.} (2016) proposed the study of codes that…

Combinatorics · Mathematics 2017-11-20 Yeow Meng Chee , Johan Chrisnata , Han Mao Kiah , Tuan Thanh Nguyen

Semidefinite programming (SDP) is a central topic in mathematical optimization with extensive studies on its efficient solvers. In this paper, we present a proof-of-principle sublinear-time algorithm for solving SDPs with low-rank…

Data Structures and Algorithms · Computer Science 2020-08-07 Nai-Hui Chia , Tongyang Li , Han-Hsuan Lin , Chunhao Wang

Watermarking has emerged as a promising technique for tracing the authorship of content generated by large language models (LLMs). Among existing approaches, the KGW scheme is particularly attractive due to its versatility, efficiency, and…

Cryptography and Security · Computer Science 2026-04-27 Chenxi Gu , Xiaoning Du , John Grundy

Re-Pair is an efficient grammar compressor that operates by recursively replacing high-frequency character pairs with new grammar symbols. The most space-efficient linear-time algorithm computing Re-Pair uses $(1+\epsilon)n+\sqrt n$ words…

Data Structures and Algorithms · Computer Science 2017-04-28 Philip Bille , Inge Li Gørtz , Nicola Prezza

Designing short DNA words is a problem of constructing a set (i.e., code) of n DNA strings (i.e., words) with the minimum length such that the Hamming distance between each pair of words is at least k and the n words satisfy a set of…

Data Structures and Algorithms · Computer Science 2012-02-01 Ming-Yang Kao , Henry C. M. Leung , He Sun , Yong Zhang

We generalise a multiple string pattern matching algorithm, recently proposed by Fredriksson and Grabowski [J. Discr. Alg. 7, 2009], to deal with arbitrary dictionaries on an alphabet of size $s$. If $r_m$ is the number of words of length…

Data Structures and Algorithms · Computer Science 2017-07-03 Frédérique Bassino , Tsinjo Rakotoarimalala , Andrea Sportiello

We consider a range of simply stated dynamic data structure problems on strings. An update changes one symbol in the input and a query asks us to compute some function of the pattern of length $m$ and a substring of a longer text. We give…

Data Structures and Algorithms · Computer Science 2018-02-20 Raphael Clifford , Allan Grønlund , Kasper Green Larsen , Tatiana Starikovskaya

Let two static sequences of strings $P$ and $S$, representing prefix and suffix conditions respectively, be given as input for preprocessing. For the query, let two positive integers $k_1$ and $k_2$ be given, as well as a string $T$ given…

Data Structures and Algorithms · Computer Science 2022-11-01 Laurentius Leonard , Shunsuke Inenaga , Hideo Bannai , Takuya Mieno

Countless variants of the Lempel-Ziv compression are widely used in many real-life applications. This paper is concerned with a natural modification of the classical pattern matching problem inspired by the popularity of such compression…

Data Structures and Algorithms · Computer Science 2011-04-22 Pawel Gawrychowski

We describe a matrix multiplication recognition algorithm for a subset of binary linear context-free rewriting systems (LCFRS) with running time $O(n^{\omega d})$ where $M(m) = O(m^{\omega})$ is the running time for $m \times m$ matrix…

Computation and Language · Computer Science 2016-03-09 Shay B. Cohen , Daniel Gildea

A word $u=u_1\dots u_n$ is a scattered factor of a word $w$ if $u$ can be obtained from $w$ by deleting some of its letters: there exist the (potentially empty) words $v_0,v_1,..,v_n$ such that $w = v_0u_1v_1...u_nv_n$. The set of all…

Formal Languages and Automata Theory · Computer Science 2020-03-11 Laura Barker , Pamela Fleischmann , Katharina Harwardt , Florin Manea , Dirk Nowotka

The palindromic tree (a.k.a. eertree) for a string $S$ of length $n$ is a tree-like data structure that represents the set of all distinct palindromic substrings of $S$, using $O(n)$ space [Rubinchik and Shur, 2018]. It is known that, when…

Data Structures and Algorithms · Computer Science 2020-11-12 Takuya Mieno , Kiichi Watanabe , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

Given a context free language $\mathcal{L(G)}$ over alphabet $\Sigma$ and a string $s \in \Sigma^*$, {\em the language edit distance} problem seeks the minimum number of edits (insertions, deletions and substitutions) required to convert…

Data Structures and Algorithms · Computer Science 2024-10-25 Tomasz Kociumaka , Barna Saha