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A weighted string, also known as a position weight matrix, is a sequence of probability distributions over some alphabet. We revisit the Weighted Shortest Common Supersequence (WSCS) problem, introduced by Amir et al. [SPIRE 2011], that is,…

We study algorithms for solving the problem of constructing a text (long string) from a dictionary (sequence of small strings). The problem has an application in bioinformatics and has a connection with the Sequence assembly method for…

Data Structures and Algorithms · Computer Science 2020-06-01 Kamil Khadiev , Vladislav Remidovskii

This work introduces approaches to assessing phrase breaks in ESL learners' speech using pre-trained language models (PLMs) and large language models (LLMs). There are two tasks: overall assessment of phrase break for a speech clip and…

Computation and Language · Computer Science 2023-06-09 Zhiyi Wang , Shaoguang Mao , Wenshan Wu , Yan Xia , Yan Deng , Jonathan Tien

The Karp-Rabin fingerprint of a string is a type of hash value that due to its strong properties has been used in many string algorithms. In this paper we show how to construct a data structure for a string $S$ of size $N$ compressed by a…

Data Structures and Algorithms · Computer Science 2013-05-17 Philip Bille , Patrick Hagge Cording , Inge Li Gørtz , Benjamin Sach , Hjalte Wedel Vildhøj , Søren Vind

We consider the problem of querying a string (or, a database) of length $N$ bits to determine all the locations where a substring (query) of length $M$ appears either exactly or is within a Hamming distance of $K$ from the query. We assume…

Information Theory · Computer Science 2017-04-27 Nagaraj T. Janakiraman , Avinash Vem , Krishna R. Narayanan , Jean-Francois Chamberland

Regular expressions constitute a fundamental notion in formal language theory and are frequently used in computer science to define search patterns. A classic algorithm for these problems constructs and simulates a non-deterministic finite…

Computational Complexity · Computer Science 2016-09-28 Arturs Backurs , Piotr Indyk

Given a text $T$ of length $n$ and a pattern $P$ of length $m$, the string matching problem is a task to find all occurrences of $P$ in $T$. In this study, we propose an algorithm that solves this problem in $O((n + m)q)$ time considering…

Data Structures and Algorithms · Computer Science 2020-04-14 Satoshi Kobayashi , Diptarama Hendrian , Ryo Yoshinaka , Ayumi Shinohara

Given a string $S$ over an alphabet $\Sigma$, the 'string indexing problem' is to preprocess $S$ to subsequently support efficient pattern matching queries, i.e., given a pattern string $P$ report all the occurrences of $P$ in $S$. In this…

Data Structures and Algorithms · Computer Science 2023-01-24 Philip Bille , Johannes Fischer , Inge Li Gørtz , Max Rishøj Pedersen , Tord Joakim Stordalen

Minimizers sampling is one of the most widely-used mechanisms for sampling strings. Let $S=S[0]\ldots S[n-1]$ be a string over an alphabet $\Sigma$. In addition, let $w\geq 2$ and $k\geq 1$ be two integers and $\rho=(\Sigma^k,\leq)$ be a…

Data Structures and Algorithms · Computer Science 2025-02-25 Wiktor Zuba , Oded Lachish , Solon P. Pissis

It is shown that a context-free grammar of size $m$ that produces a single string $w$ (such a grammar is also called a string straight-line program) can be transformed in linear time into a context-free grammar for $w$ of size…

Data Structures and Algorithms · Computer Science 2020-07-02 Moses Ganardi , Artur Jeż , Markus Lohrey

We solve an open problem related to an optimal encoding of a straight line program (SLP), a canonical form of grammar compression deriving a single string deterministically. We show that an information-theoretic lower bound for representing…

Data Structures and Algorithms · Computer Science 2013-06-18 Yasuo Tabei , Yoshimasa Takabatake , Hiroshi Sakamoto

We present an algorithm which computes the Lempel-Ziv factorization of a word $W$ of length $n$ on an alphabet $\Sigma$ of size $\sigma$ online in the following sense: it reads $W$ starting from the left, and, after reading each $r =…

Data Structures and Algorithms · Computer Science 2012-12-03 Tatiana Starikovskaya

Given a string $T$ of length $N$, the goal of grammar compression is to construct a small context-free grammar generating only $T$. Among existing grammar compression methods, RePair (recursive paring) [Larsson and Moffat, 1999] is notable…

Data Structures and Algorithms · Computer Science 2018-11-06 Kensuke Sakai , Tatsuya Ohno , Keisuke Goto , Yoshimasa Takabatake , Tomohiro I , Hiroshi Sakamoto

A popular approach to sentence compression is to formulate the task as a constrained optimization problem and solve it with integer linear programming (ILP) tools. Unfortunately, dependence on ILP may make the compressor prohibitively slow,…

Computation and Language · Computer Science 2015-10-29 Katja Filippova , Enrique Alfonseca

Many problems that can be solved in quadratic time have bit-parallel speed-ups with factor $w$, where $w$ is the computer word size. For example, edit distance of two strings of length $n$ can be solved in $O(n^2/w)$ time. In a reasonable…

Quantum Physics · Physics 2023-02-07 Massimo Equi , Arianne Meijer-van de Griend , Veli Mäkinen

In this paper, we propose a new \emph{dynamic compressed index} of $O(w)$ space for a dynamic text $T$, where $w = O(\min(z \log N \log^*M, N))$ is the size of the signature encoding of $T$, $z$ is the size of the Lempel-Ziv77 (LZ77)…

Data Structures and Algorithms · Computer Science 2016-07-20 Takaaki Nishimoto , Tomohiro I , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

A Longest Common Extension (LCE) query on a text $T$ of length $N$ asks for the length of the longest common prefix of suffixes starting at given two positions. We show that the signature encoding $\mathcal{G}$ of size $w = O(\min(z \log N…

Data Structures and Algorithms · Computer Science 2016-06-28 Takaaki Nishimoto , Tomohiro I , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

This paper presents NgramMarkov, a variant of the Markov constraints. It is dedicated to text generation in constraint programming (CP). It involves a set of n-grams (i.e., sequence of n words) associated with probabilities given by a large…

Computation and Language · Computer Science 2024-08-06 Alexandre Bonlarron , Jean-Charles Régin

A subsequence of a word $w$ is a word $u$ such that $u = w[i_1] w[i_2] , \dots w[i_{|u|}]$, for some set of indices $1 \leq i_1 < i_2 < \dots < i_k \leq |w|$. A word $w$ is $k$-subsequence universal over an alphabet $\Sigma$ if every word…

Data Structures and Algorithms · Computer Science 2023-04-11 Duncan Adamson

A decision problem is called parameterized if its input is a pair of strings. One of these strings is referred to as a parameter. The problem: given a propositional logic program P and a non-negative integer k, decide whether P has a stable…

Logic in Computer Science · Computer Science 2007-05-23 Zbigniew Lonc , Miroslaw Truszczynski
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