Related papers: On Finding All Connected Maximum-Sized Common Subg…
We introduce a new distributed algorithm for aligning graphs or finding substructures within a given graph. It is based on the cavity method and is used to study the maximum-clique and the graph-alignment problems in random graphs. The…
This work considers clustering nodes of a largely incomplete graph. Under the problem setting, only a small amount of queries about the edges can be made, but the entire graph is not observable. This problem finds applications in…
Partitioning a graph into blocks of "roughly equal" weight while cutting only few edges is a fundamental problem in computer science with a wide range of applications. In particular, the problem is a building block in applications that…
Finding a maximum clique in a given graph is one of the fundamental NP-hard problems. We compare two multi-core thread-parallel adaptations of a state-of-the-art branch and bound algorithm for the maximum clique problem, and provide a novel…
The maximum clique problem is a well known NP-Hard problem with applications in data mining, network analysis, informatics, and many other areas. Although there exist several algorithms with acceptable runtimes for certain classes of…
Identifying the connected components of a graph, apart from being a fundamental problem with countless applications, is a key primitive for many other algorithms. In this paper, we consider this problem in parallel settings. Particularly,…
Graph similarity search is among the most important graph-based applications, e.g. finding the chemical compounds that are most similar to a query compound. Graph similarity computation, such as Graph Edit Distance (GED) and Maximum Common…
Networks are largely used for modelling and analysing data and relations among them. Recently, it has been shown that the use of a single network may not be the optimal choice, since a single network may misses some aspects. Consequently,…
Induced bipartite subgraphs of maximal vertex cardinality are an essential concept for the analysis of graphs. Yet, discovering them in large graphs is known to be computationally hard. Therefore, we consider in this work a weaker notion of…
The Massive Parallel Computation (MPC) model is a theoretical framework for popular parallel and distributed platforms such as MapReduce, Hadoop, or Spark. We consider the task of computing a large matching or small vertex cover in this…
In a bipartite graph, a subgraph is an $s$-biplex if each vertex of the subgraph is adjacent to all but at most $s$ vertices on the opposite set. The enumeration of $s$-biplexes from a given graph is a fundamental problem in bipartite graph…
Finding large "cliquish" subgraphs is a central topic in graph mining and community detection. A popular clique relaxation are 2-clubs: instead of asking for subgraphs of diameter one (these are cliques), one asks for subgraphs of diameter…
Component-centric distributed graph processing platforms that use a bulk synchronous parallel (BSP) programming model have gained traction. These address the short-comings of Big Data abstractions/platforms like MapReduce/Hadoop for…
The ability to handle large scale graph data is crucial to an increasing number of applications. Much work has been dedicated to supporting basic graph operations such as subgraph matching, reachability, regular expression matching, etc. In…
We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…
The largest balanced element in signed graphs plays a vital role in helping researchers understand the fundamental structure of the graph, as it reveals valuable information about the complex relationships between vertices in the network.…
Censor-Hillel et al. [PODC'15] recently showed how to efficiently implement centralized algebraic algorithms for matrix multiplication in the congested clique model, a model of distributed computing that has received increasing attention in…
We study the recently introduced problem of finding dense common subgraphs: Given a sequence of graphs that share the same vertex set, the goal is to find a subset of vertices $S$ that maximizes some aggregate measure of the density of the…
We give the first almost-linear time algorithm for computing the \emph{maximal $k$-edge-connected subgraphs} of an undirected unweighted graph for any constant $k$. More specifically, given an $n$-vertex $m$-edge graph $G=(V,E)$ and a…
Molecule generation is central to a variety of applications. Current attention has been paid to approaching the generation task as subgraph prediction and assembling. Nevertheless, these methods usually rely on hand-crafted or external…