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Graph is a natural representation of data for a variety of real-word applications, such as knowledge graph mining, social network analysis and biological network comparison. For these applications, graph embedding is crucial as it provides…

Machine Learning · Computer Science 2020-01-24 Bitan Hou , Yujing Wang , Ming Zeng , Shan Jiang , Ole J. Mengshoel , Yunhai Tong , Jing Bai

Representation learning is the first step in automating tasks such as research paper recommendation, classification, and retrieval. Due to the accelerating rate of research publication, together with the recognised benefits of…

Digital Libraries · Computer Science 2023-03-22 Eoghan Cunningham , Derek Greene

This seminal paper proposes a new query language for graph matching and rewriting overcoming {the declarative} limitation of Cypher while outperforming {Neo4j} on graph matching and rewriting by at least one order of magnitude. We exploited…

Databases · Computer Science 2024-03-13 Oliver Robert Fox , Giacomo Bergami

Embodied agents must explore partially observed environments while maintaining reliable long-horizon memory. Existing graph-based navigation systems improve scalability, but they often treat unexplored regions as semantically unknown,…

Computer Vision and Pattern Recognition · Computer Science 2026-04-07 Peixin Chen , Guoxi Zhang , Jianwei Ma , Qing Li

Recent studies have explored graph-based approaches to retrieval-augmented generation, leveraging structured or semi-structured information -- such as entities and their relations extracted from documents -- to enhance retrieval. However,…

Computation and Language · Computer Science 2025-07-24 Zhili Shen , Chenxin Diao , Pascual Merita , Pavlos Vougiouklis , Jeff Z. Pan

We present TigerGraph, a graph database system built from the ground up to support massively parallel computation of queries and analytics. TigerGraph's high-level query language, GSQL, is designed for compatibility with SQL, while…

Databases · Computer Science 2019-01-25 Alin Deutsch , Yu Xu , Mingxi Wu , Victor Lee

Graphs are an essential data structure utilized to represent relationships in real-world scenarios. Prior research has established that Graph Neural Networks (GNNs) deliver impressive outcomes in graph-centric tasks, such as link prediction…

Machine Learning · Computer Science 2024-09-12 Xubin Ren , Jiabin Tang , Dawei Yin , Nitesh Chawla , Chao Huang

Graphs with abundant attributes are essential in modeling interconnected entities and enhancing predictions across various real-world applications. Traditional Graph Neural Networks (GNNs) often require re-training for different graph tasks…

Computation and Language · Computer Science 2026-05-26 Yanchao Tan , Hang Lv , Pengxiang Zhan , Shiping Wang , Carl Yang

Decentralized and asynchronous communications are two popular techniques to speedup communication complexity of distributed machine learning, by respectively removing the dependency over a central orchestrator and the need for…

Optimization and Control · Mathematics 2023-11-02 Mathieu Even , Anastasia Koloskova , Laurent Massoulié

Graphs are fundamental objects that find widespread applications across computer science and beyond. Graph Theory has yielded deep insights about structural properties of various families of graphs, which are leveraged in the design and…

Data Structures and Algorithms · Computer Science 2023-08-30 Rachit Nimavat

Computer-aided molecular design (CAMD) studies quantitative structure-property relationships and discovers desired molecules using optimization algorithms. With the emergence of machine learning models, CAMD score functions may be replaced…

Computational Engineering, Finance, and Science · Computer Science 2023-12-07 Shiqiang Zhang , Juan S. Campos , Christian Feldmann , Frederik Sandfort , Miriam Mathea , Ruth Misener

Graph Neural Networks (GNNs) have shown remarkable success in graph classification tasks by capturing both structural and feature-based representations. However, real-world graphs often exhibit two critical forms of imbalance: class…

Machine Learning · Computer Science 2025-07-21 Shangyou Wang , Zezhong Ding , Xike Xie

To enable heterogeneous computing systems with autonomous programming and optimization capabilities, we propose a unified, end-to-end, programmable graph representation learning (PGL) framework that is capable of mining the complexity of…

Machine Learning · Computer Science 2022-04-27 Yao Xiao , Guixiang Ma , Nesreen K. Ahmed , Mihai Capota , Theodore Willke , Shahin Nazarian , Paul Bogdan

Graph Transformers (GTs) have recently demonstrated remarkable performance across diverse domains. By leveraging attention mechanisms, GTs are capable of modeling long-range dependencies and complex structural relationships beyond local…

Machine Learning · Computer Science 2025-06-06 Jiachen Tang , Zhonghao Wang , Sirui Chen , Sheng Zhou , Jiawei Chen , Jiajun Bu

Graphs are a powerful tool for representing and analyzing unstructured, non-Euclidean data ubiquitous in the healthcare domain. Two prominent examples are molecule property prediction and brain connectome analysis. Importantly, recent works…

Machine Learning · Computer Science 2022-04-04 Kamilia Mullakaeva , Luca Cosmo , Anees Kazi , Seyed-Ahmad Ahmadi , Nassir Navab , Michael M. Bronstein

Graph Neural Networks (GNNs) are deep learning methods which provide the current state of the art performance in node classification tasks. GNNs often assume homophily -- neighboring nodes having similar features and labels--, and therefore…

Machine Learning · Computer Science 2021-10-26 Liheng Ma , Reihaneh Rabbany , Adriana Romero-Soriano

Graph partitioning (GP) is a classic problem that divides the node set of a graph into densely-connected blocks. Following the IEEE HPEC Graph Challenge and recent advances in pre-training techniques (e.g., large-language models), we…

Machine Learning · Computer Science 2024-09-04 Meng Qin , Chaorui Zhang , Yu Gao , Yibin Ding , Weipeng Jiang , Weixi Zhang , Wei Han , Bo Bai

Addressing the issues of who saying what to whom in multi-party conversations (MPCs) has recently attracted a lot of research attention. However, existing methods on MPC understanding typically embed interlocutors and utterances into…

Computation and Language · Computer Science 2023-07-19 Jia-Chen Gu , Zhen-Hua Ling , Quan Liu , Cong Liu , Guoping Hu

The problem of accelerating drug discovery relies heavily on automatic tools to optimize precursor molecules to afford them with better biochemical properties. Our work in this paper substantially extends prior state-of-the-art on…

Chemical Physics · Physics 2019-10-22 Wengong Jin , Regina Barzilay , Tommi Jaakkola

Large language models (LLMs) commonly struggle with specialized or emerging topics which are rarely seen in the training corpus. Graph-based retrieval-augmented generation (GraphRAG) addresses this by structuring domain knowledge as a graph…

Information Retrieval · Computer Science 2025-06-05 Zhefan Wang , Huanjun Kong , Jie Ying , Wanli Ouyang , Nanqing Dong
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