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Cutting edge techniques developed in the general NLP domain are often subsequently applied to the high-value, data-rich biomedical domain. The past few years have seen generative language models (LMs), instruction finetuning, and few-shot…

Computation and Language · Computer Science 2025-07-28 Aviv Brokman , Ramakanth Kavuluru

In the domain of data science, the predictive tasks of classification, regression, and imputation of missing values are commonly encountered challenges associated with tabular data. This research endeavors to apply Large Language Models…

Machine Learning · Computer Science 2026-04-23 Yazheng Yang , Yuqi Wang , Yaxuan Li , Sankalok Sen , Lei Li , Lin Qiu , Qi Liu

Recently, Vision Large Language Models (VLMs) have demonstrated high potential in computer-aided diagnosis and decision-support. However, current VLMs show deficits in domain specific surgical scene understanding, such as identifying and…

Computer Vision and Pattern Recognition · Computer Science 2025-12-08 Lennart Maack , Julia-Kristin Graß , Lisa-Marie Toscha , Nathaniel Melling , Alexander Schlaefer

Thematic analysis and other variants of inductive coding are widely used qualitative analytic methods within empirical legal studies (ELS). We propose a novel framework facilitating effective collaboration of a legal expert with a large…

Artificial Intelligence · Computer Science 2023-10-31 Jakub Drápal , Hannes Westermann , Jaromir Savelka

While originally designed for unidirectional generative modeling, decoder-only large language models (LLMs) are increasingly being adapted for bidirectional modeling. However, unidirectional and bidirectional models are typically trained…

Computation and Language · Computer Science 2025-02-17 Savya Khosla , Aditi Tiwari , Kushal Kafle , Simon Jenni , Handong Zhao , John Collomosse , Jing Shi

Distilling underlying principles from data has historically driven scientific breakthroughs. However, conventional data-driven machine learning often produces complex models that lack interpretability and generalization due to insufficient…

Materials Science · Physics 2025-07-28 Zhilong Song , Qionghua Zhou , Chunjin Ren , Chongyi Ling , Minggang Ju , Jinlan Wang

Deploying LLMs raises two coupled challenges: (1) monitoring--estimating where a model underperforms as traffic and domains drift--and (2) improvement--prioritizing data acquisition to close the largest performance gaps. We test whether an…

Computation and Language · Computer Science 2026-05-27 Pedro Memoli Buffa , Luciano Del Corro

Scaling large language models (LLMs) leads to an emergent capacity to learn in-context from example demonstrations. Despite progress, theoretical understanding of this phenomenon remains limited. We argue that in-context learning relies on…

Computation and Language · Computer Science 2023-03-15 Michael Hahn , Navin Goyal

One of the primary areas of interest in High Performance Computing is the improvement of performance of parallel workloads. Nowadays, compilable source code-based optimization tasks that employ deep learning often exploit LLVM Intermediate…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-03 Akash Dutta , Ali Jannesari

This project investigates the efficacy of Large Language Models (LLMs) in understanding and extracting scientific knowledge across specific domains and to create a deep learning framework: Knowledge AI. As a part of this framework, we…

Computation and Language · Computer Science 2024-08-12 Balaji Muralidharan , Hayden Beadles , Reza Marzban , Kalyan Sashank Mupparaju

The use of large language models (LLMs) as feature enhancers to optimize node representations, which are then used as inputs for graph neural networks (GNNs), has shown significant potential in graph representation learning. However, the…

Machine Learning · Computer Science 2025-06-12 Hang Gao , Wenxuan Huang , Fengge Wu , Junsuo Zhao , Changwen Zheng , Huaping Liu

As opposed to general English, many concepts in biomedical terminology have been designed in recent history by biomedical professionals with the goal of being precise and concise. This is often achieved by concatenating meaningful…

Computation and Language · Computer Science 2023-07-11 Bernal Jiménez Gutiérrez , Huan Sun , Yu Su

There is growing interest in the automated extraction of relevant information from clinical dialogues. However, it is difficult to collect and construct large annotated resources for clinical dialogue tasks. Recent developments in natural…

Computation and Language · Computer Science 2022-06-07 Zhengyuan Liu , Pavitra Krishnaswamy , Nancy F. Chen

Large language models (LLMs) have attracted significant attention due to their impressive general capabilities across diverse downstream tasks. However, without domain-specific optimization, they often underperform on specialized knowledge…

Computation and Language · Computer Science 2025-09-25 Kangtao Lv , Haibin Chen , Yujin Yuan , Langming Liu , Shilei Liu , Yongwei Wang , Wenbo Su , Bo Zheng

Biomedical knowledge graphs (KGs) hold rich information on entities such as diseases, drugs, and genes. Predicting missing links in these graphs can boost many important applications, such as drug design and repurposing. Recent work has…

Computation and Language · Computer Science 2021-09-22 Rahul Nadkarni , David Wadden , Iz Beltagy , Noah A. Smith , Hannaneh Hajishirzi , Tom Hope

Large language models (LLMs) have been widely explored for embedding generation. While recent studies show that in-context learning (ICL) effectively enhances the representational capability of LLMs by prepending a few task-related…

Computation and Language · Computer Science 2026-05-05 Ailiang Lin , Zhuoyun Li , Keyu Mao , Kotaro Funakoshi , Manabu Okumura

Large Language Models (LLMs) have shown superior performance in various applications and fields. To achieve better performance on specialized domains such as law and advertisement, LLMs are often continue pre-trained on in-domain data.…

Computation and Language · Computer Science 2024-06-25 Xiao Liang , Xinyu Hu , Simiao Zuo , Yeyun Gong , Qiang Lou , Yi Liu , Shao-Lun Huang , Jian Jiao

Text embeddings have become an essential part of a variety of language applications. However, methods for interpreting, exploring and reversing embedding spaces are limited, reducing transparency and precluding potentially valuable…

Computation and Language · Computer Science 2026-01-27 Brian Ondov , Chia-Hsuan Chang , Yujia Zhou , Mauro Giuffrè , Hua Xu

Recovering the structure of causal graphical models from observational data is an essential yet challenging task for causal discovery in scientific scenarios. Domain-specific causal discovery usually relies on expert validation or prior…

Artificial Intelligence · Computer Science 2025-08-27 Taiyu Ban , Lyuzhou Chen , Derui Lyu , Xiangyu Wang , Qinrui Zhu , Qiang Tu , Huanhuan Chen

Pre-trained language models (PLM) have marked a huge leap in neural dialogue modeling. While PLMs are pre-trained on large-scale text corpora, they are usually fine-tuned on scarce dialogue data with specific domain knowledge and dialogue…

Computation and Language · Computer Science 2021-12-14 Xiaodong Gu , Kang Min Yoo , Sang-Woo Lee
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