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We consider the protein sequence engineering problem, which aims to find protein sequences with high fitness levels, starting from a given wild-type sequence. Directed evolution has been a dominating paradigm in this field which has an…

Machine Learning · Computer Science 2025-01-20 Yinkai Wang , Jiaxing He , Yuanqi Du , Xiaohui Chen , Jianan Canal Li , Li-Ping Liu , Xiaolin Xu , Soha Hassoun

Software languages evolve over time for reasons such as feature additions. When grammars evolve, textual instances that originally conformed to them may become outdated. While model-driven engineering provides many techniques for…

Software Engineering · Computer Science 2026-02-13 Weixing Zhang , Bowen Jiang , Yuhong Fu , Anne Koziolek , Regina Hebig , Daniel Strüber

Recent advances in NLP are brought by a range of large-scale pretrained language models (PLMs). These PLMs have brought significant performance gains for a range of NLP tasks, circumventing the need to customize complex designs for specific…

Computation and Language · Computer Science 2022-11-08 Xu Guo , Han Yu

Knowledge retrieval with multi-modal queries plays a crucial role in supporting knowledge-intensive multi-modal applications. However, existing methods face challenges in terms of their effectiveness and training efficiency, especially when…

Information Retrieval · Computer Science 2024-01-17 Xinwei Long , Jiali Zeng , Fandong Meng , Zhiyuan Ma , Kaiyan Zhang , Bowen Zhou , Jie Zhou

Automated analysis for engineering structures offers considerable potential for boosting efficiency by minimizing repetitive tasks. Although AI-driven methods are increasingly common, no systematic framework yet leverages Large Language…

Software Engineering · Computer Science 2025-04-15 Haoran Liang , Mohammad Talebi Kalaleh , Qipei Mei

With the growing success of Large Language models (LLMs) in information-seeking scenarios, search engines are now adopting generative approaches to provide answers along with in-line citations as attribution. While existing work focuses…

Information Retrieval · Computer Science 2024-09-13 Hanane Djeddal , Pierre Erbacher , Raouf Toukal , Laure Soulier , Karen Pinel-Sauvagnat , Sophia Katrenko , Lynda Tamine

Large Language Models (LLMs) possess substantial reasoning capabilities and are increasingly applied to optimization tasks, particularly in synergy with evolutionary computation. However, while recent surveys have explored specific aspects…

Neural and Evolutionary Computing · Computer Science 2026-01-08 Yisong Zhang , Ran Cheng , Guoxing Yi , Kay Chen Tan

Multi-view multi-label feature selection aims to identify informative features from heterogeneous views, where each sample is associated with multiple interdependent labels. This problem is particularly important in machine learning…

Artificial Intelligence · Computer Science 2025-11-20 Zhiqi Chen , Yuzhou Liu , Jiarui Liu , Wanfu Gao

Large Language Models (LLMs) have significantly advanced artificial intelligence by optimizing traditional Natural Language Processing (NLP) workflows, facilitating their integration into various systems. Many such NLP systems, including…

Computation and Language · Computer Science 2025-05-13 Jiliang Ni , Jiachen Pu , Zhongyi Yang , Kun Zhou , Hui Wang , Xiaoliang Xiao , Dakui Wang , Xin Li , Jingfeng Luo , Conggang Hu

For classification problems, feature extraction is a crucial process which aims to find a suitable data representation that increases the performance of the machine learning algorithm. According to the curse of dimensionality theorem, the…

Machine Learning · Computer Science 2010-10-12 Ilknur Icke , Andrew Rosenberg

Large language models (LLMs) provide powerful means to leverage prior knowledge for predictive modeling when data is limited. In this work, we demonstrate how LLMs can use their compressed world knowledge to generate intrinsically…

Training Large Language Models(LLMs) is one of the most compute-intensive tasks in high-performance computing. Predicting end-to-end training time for multi-billion parameter models distributed across hundreds of GPUs remains challenging…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-30 Biyao Zhang , Mingkai Zheng , Debargha Ganguly , Xuecen Zhang , Vikash Singh , Vipin Chaudhary , Zhao Zhang

In sequential decision-making (SDM) tasks, methods like reinforcement learning (RL) and heuristic search have made notable advances in specific cases. However, they often require extensive exploration and face challenges in generalizing…

Machine Learning · Computer Science 2024-10-11 Xue Yan , Yan Song , Xidong Feng , Mengyue Yang , Haifeng Zhang , Haitham Bou Ammar , Jun Wang

Large language models (LLMs) deployed as agents solve user-specified tasks over multiple steps while keeping the required manual engagement to a minimum. Crucially, such LLMs need to ground their generations in any feedback obtained to…

Computation and Language · Computer Science 2025-02-19 Jonas Gehring , Kunhao Zheng , Jade Copet , Vegard Mella , Quentin Carbonneaux , Taco Cohen , Gabriel Synnaeve

3D Gaussian splatting (3DGS) is a transformative technique with profound implications on novel view synthesis and real-time rendering. Given its importance, there have been many attempts to improve its performance. However, with the…

Hardware Architecture · Computer Science 2025-10-14 Yi Hu , Huiyang Zhou

Large Language Models (LLMs) often struggle with dynamically changing knowledge and handling unknown static information. Retrieval-Augmented Generation (RAG) is employed to tackle these challenges and has a significant impact on improving…

Computation and Language · Computer Science 2025-09-18 Zhen Zhang , Xinyu Wang , Yong Jiang , Zile Qiao , Zhuo Chen , Guangyu Li , Feiteng Mu , Mengting Hu , Pengjun Xie , Fei Huang

As retrieval-augmented generation prevails in large language models, embedding models are becoming increasingly crucial. Despite the growing number of general embedding models, prior work often overlooks the critical role of training data…

Computation and Language · Computer Science 2025-01-16 Xinshuo Hu , Zifei Shan , Xinping Zhao , Zetian Sun , Zhenyu Liu , Dongfang Li , Shaolin Ye , Xinyuan Wei , Qian Chen , Baotian Hu , Haofen Wang , Jun Yu , Min Zhang

We investigate how to teach large language models (LLMs) to perform scientific reasoning by leveraging expert discussions as a learning signal. Focusing on the genomics domain, we develop an automated pipeline to extract trainable data and…

Artificial Intelligence · Computer Science 2025-06-04 Ming Yin , Yuanhao Qu , Ling Yang , Le Cong , Mengdi Wang

Machine learning algorithms have difficulties to generalize over a small set of examples. Humans can perform such a task by exploiting vast amount of background knowledge they possess. One method for enhancing learning algorithms with…

Machine Learning · Computer Science 2020-06-09 Michal Badian , Shaul Markovitch

Large Language Models (LLMs) have achieved significant progress across various fields and have exhibited strong potential in evolutionary computation, such as generating new solutions and automating algorithm design. Surrogate-assisted…

Neural and Evolutionary Computing · Computer Science 2024-06-18 Hao Hao , Xiaoqun Zhang , Aimin Zhou
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