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The swimming properties of an E. coli-type model bacterium are investigated by mesoscale hy- drodynamic simulations, combining molecular dynamics simulations of the bacterium with the multiparticle particle collision dynamics method for the…

Soft Condensed Matter · Physics 2016-08-23 Jinglei Hu , Mingcheng Yang , Gerhard Gompper , Roland G. Winkler

Cells and other soft particles are often forced to flow in confined geometries in both laboratory and natural environments, where the elastic deformation induces an additional drag and pressure drop across the particle. In contrast with…

Fluid Dynamics · Physics 2025-07-09 Charles Paul Moore , Hiba Belkadi , Brouna Safi , Gabriel Amselem , Charles N. Baroud

A conformation space kinetic model is constructed to drive the deformation cycle of a three-sphere swimmer to achieve propulsion at low Reynolds number. We analyze the effect of an external load on the performance of this kinetic swimmer,…

Soft Condensed Matter · Physics 2009-11-13 Ramin Golestanian , Armand Ajdari

Inertial lift forces are exploited within inertial microfluidic devices to position, segregate, and sort particles or droplets. However the forces and their focusing positions can currently only be predicted by numerical simulations, making…

Fluid Dynamics · Physics 2016-07-21 Kaitlyn Hood , Sungyon Lee , Marcus Roper

Scaling laws for the propulsive performance of rigid foils undergoing oscillatory heaving and pitching motions are presented. Water tunnel experiments on a nominally two-dimensional flow validate the scaling laws, with the scaled data for…

Fluid Dynamics · Physics 2017-06-09 Daniel Floryan , Tyler Van Buren , Clarence W. Rowley , Alexander J. Smits

The twisting and writhing of a cell body and associated mechanical stresses is an underappreciated constraint on microbial self-propulsion. Multi-flagellated bacteria can even buckle and writhe under their own activity as they swim through…

Soft Condensed Matter · Physics 2023-09-25 Wilson Lough , Douglas B. Weibel , Saverio E. Spagnolie

Self-propelled colloids constitute an important class of intrinsically non-equilibrium matter. Typically, such a particle moves ballistically at short times, but eventually changes its orientation, and displays random-walk behavior in the…

Soft Condensed Matter · Physics 2019-05-27 Jochen Arlt , Vincent A Martinez , Angela Dawson , Teuta Pilizota , Wilson C K Poon

The effect of flexibility on the hydrodynamic loads and on the flow structures generated on a rectangular foil when oscillating in pitch has been studied. Hydrodynamic loads were measured with a 6-axes balance, and the flow structures were…

Fluid Dynamics · Physics 2013-10-15 R. Fernandez-Prats , F. J. Huera-Huarte

Recently, we have demonstrated that the problems finding a suitable adiabatic approximation in time-dependent one-body reduced density matrix functional theory can be remedied by introducing an additional degree of freedom to describe the…

Chemical Physics · Physics 2014-03-10 Klaas J. H. Giesbertz , Oleg V. Gritsenko , Evert Jan Baerends

Motivated by the intriguing motility of spirochetes (helically-shaped bacteria that screw through viscous fluids due to the action of internal periplasmic flagella), we examine the fundamental fluid dynamics of superhelices translating and…

Fluid Dynamics · Physics 2009-11-13 Sunghwan Jung , Kathleen Mareck , Lisa Fauci , Michael J. Shelley

Flagellated bacteria exploiting helical propulsion are known to swim along circular trajectories near surfaces. Fluid dynamics predicts this circular motion to be clockwise (CW) above a rigid surface (when viewed from inside the fluid) and…

Biological Physics · Physics 2014-07-18 Diego Lopez , Eric Lauga

The sliding friction force exerted by stochastic linkers interacting with a moving filament is calculated. The elastic properties of the substrate on which the linkers are anchored are shown to strongly influence the friction force. In some…

Soft Condensed Matter · Physics 2015-06-17 Pierre Sens

Many eukaryotic cells use the active waving motion of flexible flagella to self-propel in viscous fluids. However, the criteria governing the selection of particular flagellar waveforms among all possible shapes has proved elusive so far.…

Biological Physics · Physics 2013-08-02 Christophe Eloy , Eric Lauga

Helical ribbons arise in many biological and engineered systems, often driven by anisotropic surface stress, residual strain, and geometric or elastic mismatch between layers of a laminated composite. A full mathematical analysis is…

Mathematical Physics · Physics 2012-09-18 Zi Chen , Carmel Majidi , David J. Srolovitz , Mikko Haataja

A theory is set up of spherical proteins interacting by screened electrostatics and constant adhesion, in which the effective adhesion parameter is optimized by a variational principle for the free energy. An analytical approach to the…

Soft Condensed Matter · Physics 2009-11-10 Peter Prinsen , Theo Odijk

We create a mechanism inspired by bacterial swimmers, featuring two flexible flagella with individual control over rotation speed and direction in viscous fluid environments. Using readily available materials, we design and fabricate…

Robotics · Computer Science 2024-05-07 Zhuonan Hao , Siddharth Zalavadia , Mohammad Khalid Jawed

Although the motility of the flagellated bacteria, Escherichia coli, has been widely studied, the effect of viscosity on swimming speed remains controversial. The swimming mode of wild-type E.coli is often idealized as a "run-and- tumble"…

Biological Physics · Physics 2018-05-09 Zijie Qu , Fatma Zeynep Temel , Rene Henderikx , Kenneth S. Breuer

We investigate the dynamics of a single semiflexible filament, under the action of a compressing force, using numerical simulations and scaling arguments. The force is applied along the end to end vector at one extremity of the filament,…

Soft Condensed Matter · Physics 2009-11-07 P. Ranjith , P. B. Sunil Kumar

This study systematically investigates the dynamics of the bacterial transition from free-swimming to surface adhesion, a process characterized by both height $h$ and inclination angle $\Psi$. The surface entrapment process is divided into…

Soft Condensed Matter · Physics 2025-06-25 Baopi Liu , Bowen Jin , Ning An

Epithelial cell layers on soft elastic substrates or pillar arrays are commonly used as model systems for investigating the role of force in tissue growth, maintenance and repair. Here we show analytically that the experimentally observed…

Tissues and Organs · Quantitative Biology 2012-01-16 Carina M. Edwards , Ulrich S. Schwarz
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