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In recent years, the development of large pretrained language models, such as BERT and GPT, significantly improved information extraction systems on various tasks, including relation classification. State-of-the-art systems are highly…

Computation and Language · Computer Science 2023-08-07 Lars Klöser , Andre Büsgen , Philipp Kohl , Bodo Kraft , Albert Zündorf

The effects of the evolution force are observable in nature at all structural levels ranging from small molecular systems to conversely enormous biospheric systems. However, the evolution force and work associated with formation of…

Biological Physics · Physics 2021-03-19 Leroy K. Davis

Previous models for learning the semantic vectors of items and their groups, such as words, sentences, nodes, and graphs, using distributed representation have been based on the assumption that the basic sense of an item corresponds to one…

Machine Learning · Computer Science 2024-04-30 Yukio Ohsawa , Dingming Xue , Kaira Sekiguchi

Humans communicate with graphical sketches apart from symbolic languages. Primarily focusing on the latter, recent studies of emergent communication overlook the sketches; they do not account for the evolution process through which symbolic…

Computation and Language · Computer Science 2023-02-27 Shuwen Qiu , Sirui Xie , Lifeng Fan , Tao Gao , Jungseock Joo , Song-Chun Zhu , Yixin Zhu

We axiomatize the molecular-biology reasoning style, show compliance of the standard reference: Ptashne, A Genetic Switch, and present proof-theory-induced technologies to help infer phenotypes and to predict life cycles from genotypes. The…

Other Quantitative Biology · Quantitative Biology 2019-03-19 René Vestergaard , Emmanuel Pietriga

The evolution in coding DNA sequences brings new flexibility and freedom to the codon words, even as the underlying nucleotides get significantly ordered. These curious contra-rules of gene organisation are observed from the distribution of…

Biological Physics · Physics 2007-05-23 Sujay Chattopadhyay , William A. Kanner , Jayprokas Chakrabarti

Can scientific discovery be made arbitrarily easy by choosing the right representation, collecting enough data, and deploying sufficiently powerful algorithms? This paper argues that the answer is fundamentally negative. We introduce the…

Artificial Intelligence · Computer Science 2026-04-23 Angshul Majumdar

This article introduces the Event based Prediction Suffix Tree (EPST), a biologically inspired, event-based prediction algorithm. The EPST learns a model online based on the statistics of an event based input and can make predictions over…

Machine Learning · Computer Science 2023-10-24 Evie Andrew , Travis Monk , André van Schaik

Information is a key concept in evolutionary biology. Information is stored in biological organism's genomes, and used to generate the organism as well as to maintain and control it. Information is also "that which evolves". When a…

Populations and Evolution · Quantitative Biology 2012-07-25 Christoph Adami

Recent research has extended methods from the fields of thermodynamics and statistical mechanics into other disciplines. Most notably, one recent work creates a unified theoretical framework to understand evolutionary biology, machine…

Populations and Evolution · Quantitative Biology 2024-05-22 Daniel Sadasivan , Cole Cantu , Cecilia Marsh , Andrew Graham

One can study communications by using Shannon's (1948) mathematical theory of communication. In social communications, however, the channels are not "fixed", but themselves subject to change. Communication systems change by communicating…

Adaptation and Self-Organizing Systems · Physics 2010-03-16 Loet Leydesdorff

Symbolic Regression (SR) allows for the discovery of scientific equations from data. To limit the large search space of possible equations, prior knowledge has been expressed in terms of formal grammars that characterize subsets of…

Machine Learning · Computer Science 2024-06-11 Tim Schneider , Amin Totounferoush , Wolfgang Nowak , Steffen Staab

Emotions play a central role in human communication, shaping trust, engagement, and social interaction. As artificial intelligence systems powered by large language models become increasingly integrated into everyday life, enabling them to…

Audio and Speech Processing · Electrical Eng. & Systems 2026-03-11 Soumya Dutta

Human language has a distinct systematic structure, where utterances break into individually meaningful words which are combined to form phrases. We show that natural-language-like systematicity arises in codes that are constrained by a…

Computation and Language · Computer Science 2025-11-19 Richard Futrell , Michael Hahn

If language evolved by sexual selection to display superior intelligence, then we require conversational skills, to impress other people, gain high social status, and get a mate. Conversational skills include a Theory of Mind, a sense of…

Neurons and Cognition · Quantitative Biology 2024-05-13 Robert Worden

Exploiting the mathematical curiosity of intransitive dice, we present a simple theoretical model for co-evolution that captures scales ranging from the genome of the individual to the system-wide emergence of species diversity. We study a…

Populations and Evolution · Quantitative Biology 2022-12-02 Julius B. Kirkegaard , Kim Sneppen

Information can evolve as a physical consequence of non-equilibrium dynamics, even in the absence of genes, replication, or predefined fitness functions. We present Stability-Driven Assembly (SDA), a framework in which stochastic assembly…

Populations and Evolution · Quantitative Biology 2026-05-11 Dan Adler

A dynamical theory for the evolution of the genetic code is presented, which accounts for its universality and optimality. The central concept is that a variety of collective, but non-Darwinian, mechanisms likely to be present in early…

Populations and Evolution · Quantitative Biology 2009-11-13 Kalin Vetsigian , Carl Woese , Nigel Goldenfeld

Evolutionary symbolic regression approaches are powerful tools that can approximate an explicit mapping between input features and observation for various problems. However, ensuring that explored expressions maintain consistency with…

Optimization and Control · Mathematics 2024-11-19 Maximilian Reissmann , Yuan Fang , Andrew Ooi , Richard Sandberg

The central challenge of AI for Science is not reasoning alone, but the ability to create computational methods in an open-ended scientific world. Existing LLM-based agents rely on static, pre-defined tool libraries, a paradigm that…

Artificial Intelligence · Computer Science 2026-01-13 Jiaxuan Lu , Ziyu Kong , Yemin Wang , Rong Fu , Haiyuan Wan , Cheng Yang , Wenjie Lou , Haoran Sun , Lilong Wang , Yankai Jiang , Xiaosong Wang , Xiao Sun , Dongzhan Zhou