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Phylogenetic trees (i.e. evolutionary trees, additive trees or X-trees) play a key role in the processes of modeling and representing species evolution. Genome evolution of a given group of species is usually modeled by a species…

Populations and Evolution · Quantitative Biology 2023-01-03 Vladimir Makarenkov , Gayane S. Barseghyan , Nadia Tahiri

Humankind has spread worldwide supported by cultural and technological knowledge, but the environmental sustainability on the human niche evolution depends on a new human beings relationship with the biosphere. Human lifestyles nowadays are…

Populations and Evolution · Quantitative Biology 2022-01-03 Miguel da Silva Pinheiro , Pablo José Francisco Pena Rodrigues

Changepoint detection is commonly formulated by minimizing the sum of in-sample losses to quantify the model's overall fit. However, for flexible modeling procedures -- especially those involving high-dimensional parameter spaces or…

Methodology · Statistics 2026-05-05 Chengde Qian , Guanghui Wang , Zhaojun Wang , Changliang Zou

We investigate the problem of discovering and modeling regime shifts in an ecosystem comprising multiple time series known as co-evolving time series. Regime shifts refer to the changing behaviors exhibited by series at different time…

Machine Learning · Computer Science 2022-05-16 Etienne Gael Tajeuna , Mohamed Bouguessa , Shengrui Wang

The concept of hierarchy in complex systems is tightly linked to co-evolutionary processes. We propose here to explore it in the case of the co-evolution between transportation networks and territories. More precisely, we extend a…

Physics and Society · Physics 2020-02-03 Juste Raimbault

We address the problem of tracking and detecting interactions between the different groups of runners that form during a race. In athletic races control points are set to monitor the progress of athletes over the course. Intuitively, a {\it…

Computational Geometry · Computer Science 2018-12-31 Y. Diez , M. Fort , M. Korman , J. A. Sellarès

Learning classifier systems (LCSs) originated from cognitive-science research but migrated such that LCS became powerful classification techniques. Modern LCSs can be used to extract building blocks of knowledge to solve more difficult…

Neural and Evolutionary Computing · Computer Science 2020-06-03 Isidro M. Alvarez , Trung B. Nguyen , Will N. Browne , Mengjie Zhang

The past decade has seen tremendous growth in the field of Complex Social Networks. Several network generation models have been extensively studied to develop an understanding of how real world networks evolve over time. Two important…

Social and Information Networks · Computer Science 2017-01-23 Muhammad Qasim Pasta , Faraz Zaidi

Many natural, engineered, and social systems can be represented using the framework of a layered network, where each layer captures a different type of interaction between the same set of nodes. The study of such multiplex networks is a…

Physics and Society · Physics 2020-05-12 Haochen Wu , Ryan G. James , James P. Crutchfield , Raissa M. D'Souza

X-chromosome association study has specific model uncertainty challenges, such as unknown X-chromosome inactivation status and baseline allele, and considering nonadditive and gene-sex interaction effects in the analysis or not. Although…

Methodology · Statistics 2025-11-25 Ruilin Bai , Bo Chen

In this paper we present the application of a novel methodology to scientific citation and collaboration networks. This methodology is designed for understanding the governing dynamics of evolving networks and relies on an attachment…

Disordered Systems and Neural Networks · Physics 2009-09-29 Gabor Csardi , Katherine Strandburg , Laszlo Zalanyi , Jan Tobochnik , Peter Erdi

Seeding then expanding is a commonly used scheme to discover overlapping communities in a network. Most seeding methods are either too complex to scale to large networks or too simple to select high-quality seeds, and the non-principled…

Social and Information Networks · Computer Science 2015-02-27 Changxing Shang , Shengzhong Feng , Zhongying Zhao , Jianping Fan

We have generalized our ``unified'' model of evolutionary ecology by taking into account the possible movements of the organisms from one ``patch'' to another within the same eco-system. We model the spatial extension of the eco-system…

Populations and Evolution · Quantitative Biology 2009-11-10 Dietrich Stauffer , Ambarish Kunwar , Debashish Chowdhury

We study the problem of selecting limited features to observe such that models trained on them can perform well simultaneously across multiple subpopulations. This problem has applications in settings where collecting each feature is…

Machine Learning · Computer Science 2025-10-27 Maitreyi Swaroop , Tamar Krishnamurti , Bryan Wilder

A two-type two-sex branching process is introduced with the aim of describing the interaction of predator and prey populations with sexual reproduction and promiscuous mating. In each generation and in each species the total number of…

Populations and Evolution · Quantitative Biology 2021-01-29 Cristina Gutierrez , Carmen Minuesa

Most classification methods are based on the assumption that data conforms to a stationary distribution. The machine learning domain currently suffers from a lack of classification techniques that are able to detect the occurrence of a…

Machine Learning · Statistics 2012-01-05 Alzennyr Da Silva , Yves Lechevallier , Fabrice Rossi , Francisco De A. T. De Carvahlo

In this thesis the method for social group evolution discovery, called GED, is analyzed. Especially, GED method is compared with other methods tracking changes in groups over time with focus on accuracy, computational cost, ease of…

Social and Information Networks · Computer Science 2017-08-08 Stanisław Saganowski

Recently, evolving networks are becoming a suitable form to model many real-world complex systems, due to their peculiarities to represent the systems and their constituting entities, the interactions between the entities and the…

Artificial Intelligence · Computer Science 2017-09-21 Angelo Impedovo , Corrado Loglisci , Michelangelo Ceci

Expert evaluation in software life cycle is playing a vital role. In this paper, we have discussed about the formal framework for selecting the best model with some enhanced features. In our work we have introduced a novel algorithm X Chain…

Software Engineering · Computer Science 2014-02-03 Suprita Das , Rajesh Duvvuru , Sonal Raj

The paper studies the problem of detecting and locating change points in multivariate time-evolving data. The problem has a long history in statistics and signal processing and various algorithms have been developed primarily for simple…

Machine Learning · Statistics 2025-03-13 Jialiang Geng , George Michailidis