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The unprecedented prowess of measurement techniques provides a detailed, multi-scale look into the depths of living systems. Understanding these avalanches of high-dimensional data -- by distilling underlying principles and mechanisms --…

Other Quantitative Biology · Quantitative Biology 2021-08-16 Jean-Pierre Eckmann , Tsvi Tlusty

To cope with the complexity of large networks, a number of dimensionality reduction techniques for graphs have been developed. However, the extent to which information is lost or preserved when these techniques are employed has not yet been…

Molecular Networks · Quantitative Biology 2015-08-28 Hector Zenil , Narsis A. Kiani , Jesper Tegnér

We present a novel, domain-agnostic, model-independent, unsupervised, and universally applicable Machine Learning approach for dimensionality reduction based on the principles of algorithmic complexity. Specifically, but without loss of…

Data Structures and Algorithms · Computer Science 2025-05-06 Hector Zenil , Narsis A. Kiani , Alyssa Adams , Felipe S. Abrahão , Antonio Rueda-Toicen , Allan A. Zea , Luan Ozelim , Jesper Tegnér

Reducing dimension redundancy to find simplifying patterns in high-dimensional datasets and complex networks has become a major endeavor in many scientific fields. However, detecting the dimensionality of their latent space is challenging…

Physics and Society · Physics 2022-11-09 Pedro Almagro , Marian Boguna , M. Angeles Serrano

In distributed networks, it is often useful for the nodes to be aware of dense subgraphs, e.g., such a dense subgraph could reveal dense subtructures in otherwise sparse graphs (e.g. the World Wide Web or social networks); these might…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-08-08 Atish Das Sarma , Ashwin Lall , Danupon Nanongkai , Amitabh Trehan

A graphon is a limiting object used to describe the behaviour of large networks through a function that captures the probability of edge formation between nodes. Although the merits of graphons to describe large and unlabelled networks are…

Methodology · Statistics 2024-08-23 Charles Dufour , Sofia C. Olhede

We develop reduced, stochastic models for high dimensional, dissipative dynamical systems that relax very slowly to equilibrium and can encode long term memory. We present a variety of empirical and first principles approaches for model…

Statistical Mechanics · Physics 2017-05-24 Shankar C. Venkataramani , Raman C. Venkataramani , Juan M. Restrepo

We present an exact dimensional reduction for high-dimensional dynamical systems composed of $N$ identical dynamical units governed by quasi-linear ordinary differential equations (ODEs) of order $M$. In these systems, each unit follows a…

Adaptation and Self-Organizing Systems · Physics 2026-05-15 Felix Augustsson , Erik Andreas Martens , Rok Cestnik

In this paper we propose a pooling approach for convolutional information processing on graphs relying on the theory of graphons and limits of dense graph sequences. We present three methods that exploit the induced graphon representation…

Machine Learning · Computer Science 2023-08-24 Alejandro Parada-Mayorga , Zhiyang Wang , Alejandro Ribeiro

The control of high-dimensional systems, such as soft robots, requires models that faithfully capture complex dynamics while remaining computationally tractable. This work presents a framework that integrates Graph Neural Network…

Traditional mathematical approaches to studying analytically the dynamics of neural networks rely on the mean-field approximation, which is rigorously applicable only to networks of infinite size. However, all existing real biological…

Neurons and Cognition · Quantitative Biology 2019-04-30 Diego Fasoli , Stefano Panzeri

Large-scale networked systems typically operate under resource constraints, and it is also difficult to exactly obtain the network structure between nodes. To address these issues, this paper investigates a sparse optimal control for…

Optimization and Control · Mathematics 2025-07-25 Takuya Ikeda , Masaaki Nagahara

We develop a principled mathematical framework for controlling nonlinear, networked dynamical systems. Our method integrates dimensionality reduction, bifurcation theory and emerging model discovery tools to find low-dimensional subspaces…

Dynamical Systems · Mathematics 2020-06-24 Megan Morrison , J. Nathan Kutz

Here we present the entropic dynamics formalism for networks. That is, a framework for the dynamics of graphs meant to represent a network derived from the principle of maximum entropy and the rate of transition is obtained taking into…

Physics and Society · Physics 2021-04-29 Felipe Xavier Costa , Pedro Pessoa

Diagonal linear networks (DLNs) are a tractable model that captures several nontrivial behaviors in neural network training, such as initialization-dependent solutions and incremental learning. These phenomena are typically studied in…

Machine Learning · Statistics 2026-03-16 Sota Nishiyama , Masaaki Imaizumi

Convolutional neural networks (CNNs) leverage the great power in representation learning on regular grid data such as image and video. Recently, increasing attention has been paid on generalizing CNNs to graph or network data which is…

Social and Information Networks · Computer Science 2018-08-21 Yao Ma , Suhang Wang , Charu C. Aggarwal , Dawei Yin , Jiliang Tang

Dimensional reduction techniques have long been used to visualize the structure and geometry of high dimensional data. However, most widely used techniques are difficult to interpret due to nonlinearities and opaque optimization processes.…

Quantitative Methods · Quantitative Biology 2024-01-09 Andrew Baumgartner , Sui Huang , Jennifer Hadlock , Cory Funk

It is common knowledge that a key dynamical characteristic of a network is its spectrum (the collection of all eigenvalues of the network's weighted adjacency matrix). In \cite{BW10} we demonstrated that it is possible to reduce a network,…

Dynamical Systems · Mathematics 2015-06-05 Leonid Bunimovich , Benjamin Webb

The classical low-dimensional models of thin structures are based on certain a priori assumptions on the three-dimensional deformation and/or stress fields, diverse in nature but all motivated by the smallness of certain dimensions with…

Mathematical Physics · Physics 2013-05-15 Roberto Paroni , Paolo Podio-Guidugli

Current dynamic networks and dynamic pruning methods have shown their promising capability in reducing theoretical computation complexity. However, dynamic sparse patterns on convolutional filters fail to achieve actual acceleration in…

Computer Vision and Pattern Recognition · Computer Science 2021-03-25 Changlin Li , Guangrun Wang , Bing Wang , Xiaodan Liang , Zhihui Li , Xiaojun Chang
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