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Related papers: APPA : Agentic Preformulation Pathway Assistant

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Modern AI technologies for drug discovery are distributed across heterogeneous platforms-including web applications, desktop environments, and code libraries-leading to fragmented workflows, inconsistent interfaces, and high integration…

With the fast-growing and evolving omics data, the demand for streamlined and adaptable tools to handle the analysis continues to grow. In response to this need, we introduce Auto Bioinformatics Analysis (AutoBA), an autonomous AI agent…

Genomics · Quantitative Biology 2023-09-08 Juexiao Zhou , Bin Zhang , Xiuying Chen , Haoyang Li , Xiaopeng Xu , Siyuan Chen , Xin Gao

Historically, scientific discovery has been a lengthy and costly process, demanding substantial time and resources from initial conception to final results. To accelerate scientific discovery, reduce research costs, and improve research…

Human-Computer Interaction · Computer Science 2025-06-18 Samuel Schmidgall , Yusheng Su , Ze Wang , Ximeng Sun , Jialian Wu , Xiaodong Yu , Jiang Liu , Michael Moor , Zicheng Liu , Emad Barsoum

Large language models (LLMs) are increasingly used as tool-augmented agents for multi-step decision making, yet training robust tool-using agents remains challenging. Existing methods still require manual intervention, depend on…

One of the key requirements for incorporating machine learning into the drug discovery process is complete reproducibility and traceability of the model building and evaluation process. With this in mind, we have developed an end-to-end…

Public research results on large-scale supervised finetuning of AI agents remain relatively rare, since the collection of agent training data presents unique challenges. In this work, we argue that the bottleneck is not a lack of underlying…

There has been unprecedented interest in developing agents that expand the boundary of scientific discovery, primarily by optimizing quantitative objective functions specified by scientists. However, for grand challenges in science, these…

Intelligent Process Automation (IPA) is emerging as a sub-field of AI to support the automation of long-tail processes which requires the coordination of tasks across different systems. So far, the field of IPA has been largely driven by…

Human-Computer Interaction · Computer Science 2020-02-05 Deborah Ferreira , Julia Rozanova , Krishna Dubba , Dell Zhang , Andre Freitas

Building and deploying machine learning solutions in healthcare remains expensive and labor-intensive due to fragmented preprocessing workflows, model compatibility issues, and stringent data privacy constraints. In this work, we introduce…

Artificial Intelligence · Computer Science 2025-07-25 Soorya Ram Shimgekar , Shayan Vassef , Abhay Goyal , Navin Kumar , Koustuv Saha

Current pharmaceutical formulation development still strongly relies on the traditional trial-and-error approach by individual experiences of pharmaceutical scientists, which is laborious, time-consuming and costly. Recently, deep learning…

Machine Learning · Computer Science 2018-12-05 Yilong Yang , Zhuyifan Ye , Yan Su , Qianqian Zhao , Xiaoshan Li , Defang Ouyang

Drug discovery remains a formidable challenge: more than 90 percent of candidate molecules fail in clinical evaluation, and development costs often exceed one billion dollars per approved therapy. Disparate data streams, from genomics and…

Artificial Intelligence · Computer Science 2025-04-28 Kevin Song , Andrew Trotter , Jake Y. Chen

Robotic Process Automation (RPA) is a technology for automating repetitive routines consisting of sequences of user interactions with one or more applications. In order to fully exploit the opportunities opened by RPA, companies need to…

Artificial Intelligence · Computer Science 2020-01-07 Volodymyr Leno , Marlon Dumas , Marcello La Rosa , Fabrizio Maria Maggi , Artem Polyvyanyy

Autonomous multi-agent systems based on large language models (LLMs) have demonstrated remarkable abilities in independently solving complex tasks in a wide breadth of application domains. However, these systems hit critical reasoning,…

Artificial Intelligence · Computer Science 2026-05-15 Evan Rose , Tushin Mallick , Matthew D. Laws , Cristina Nita-Rotaru , Alina Oprea

The multi-agent pathfinding (MAPF) problem seeks collision-free paths for a team of agents from their current positions to their pre-set goals in a known environment, and is an essential problem found at the core of many logistics,…

Robotics · Computer Science 2023-10-13 Chengyang He , Tianze Yang , Tanishq Duhan , Yutong Wang , Guillaume Sartoretti

The rise of Agentic applications and automation in the Voice AI industry has led to an increased reliance on Large Language Models (LLMs) to navigate graph-based logic workflows composed of nodes and edges. However, existing methods face…

Artificial Intelligence · Computer Science 2025-03-11 Alex Casella , Wayne Wang

Despite substantial advances in large language models (LLMs), generating factually consistent responses for knowledge-intensive question answering remains challenging. These difficulties are primarily due to hallucinations and the…

Computation and Language · Computer Science 2026-05-19 Taolin Zhang , Dongyang Li , Chen Chen , Qizhou Chen , Jiuheng Wan , Xiaofeng He , Chengyu Wang , Richang Hong

The previous advancements in pathology image understanding primarily involved developing models tailored to specific tasks. Recent studies has demonstrated that the large vision-language model can enhance the performance of various…

Artificial Intelligence · Computer Science 2024-08-20 Dawei Dai , Yuanhui Zhang , Long Xu , Qianlan Yang , Xiaojing Shen , Shuyin Xia , Guoyin Wang

Predicting drug-target binding affinity (DTA) is essential for identifying potential therapeutic candidates in drug discovery. However, most existing models rely heavily on static protein structures, often overlooking the dynamic nature of…

Robotics · Computer Science 2025-05-20 Dan Luo , Jinyu Zhou , Le Xu , Sisi Yuan , Xuan Lin

Drug discovery is a complex, multi-step pipeline that remains heavily dependent on manual, experience-driven operations; meanwhile, existing customized artificial intelligence tools are fragmented across web applications, desktop software,…

Biomolecules · Quantitative Biology 2026-03-03 Qihua Pan , Dong Xu , Qianwei Yang , Jenna Xinyi Yao , Sisi Yuan , Zexuan Zhu , Jianqiang Li , Junkai Ji

Multi-Agent Systems have recently emerged as a promising paradigm for collaborative reasoning and solving complex tasks. However, the design of collaborative learning algorithms in multi-agent systems faces several challenges, including…

Multiagent Systems · Computer Science 2025-08-27 Yingfan Deng , Anhao Zhou , Yuan Yuan , Xiao Zhang , Yifei Zou , Dongxiao Yu