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Related papers: Autocatalysis due to combinatorial enhancement

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Catalysis-driven synthetic molecular motors operate in a loose mechanochemical coupling regime, one in which a decomposition of a fuel molecule does not reliably produce a forward step. In that regime, stochastic backward steps can…

Statistical Mechanics · Physics 2026-01-16 Geyao Gu , Drew Alvarez , John Strahan , Alex Albaugh , Emanuele Penocchio , Todd R. Gingrich

The motion of an artificial micro-scale swimmer that uses a chemical reaction catalyzed on its own surface to achieve autonomous propulsion is fully characterized experimentally. It is shown that at short times, it has a substantial…

Autocatalytic Sets are reaction networks theorised as networks at the basis of life. Their main feature is the ability of spontaneously emerging and self-reproducing. The Reflexively and Food-generated theory provides a formal definition of…

Molecular Networks · Quantitative Biology 2020-10-19 Alessandro Ravoni

The cytoskeleton is an active composite of filamentous proteins that dictates diverse mechanical properties and processes in eukaryotic cells by generating forces and autonomously restructuring itself. Enzymatic motors that act on the…

The self-assembly of binary nanoparticle superlattices from colloidal mixtures is a promising method for the fabrication of complex colloidal co-crystal structures. However, binary mixtures often form amorphous or metastable phases instead…

Soft Condensed Matter · Physics 2022-05-11 R. Allen LaCour , Timothy C. Moore , Sharon C. Glotzer

We study a simplified scheme of $k$ coupled autocatalytic reactions, previously introduced by Togashi and Kaneko. The role of stochastic fluctuations is elucidated through the use of the van Kampen system-size expansion and the results…

Statistical Mechanics · Physics 2015-04-09 Thierry Dauxois , Francesca Di Patti , Duccio Fanelli , Alan McKane

We study the effect of spatial confinement on the strength of propulsive diffusiophoretic forces acting on a particle that generates density gradients by exploiting the chemical free energy of its environment. Using a recently proposed…

Statistical Mechanics · Physics 2007-09-17 M. N. Popescu , S. Dietrich , G. Oshanin

The generally accepted view of osmotic pressure is that it is a colligative property, along with freezing point depression, boiling point elevation and vapour pressure lowering. These properties ideally depend on the concentration of…

Soft Condensed Matter · Physics 2012-03-02 Martin Chaplin

Cells generally convert nutrient resources to useful products via energy transduction. Accordingly, the thermodynamic efficiency of this conversion process is one of the most essential characteristics of living organisms. However, although…

Biological Physics · Physics 2016-05-04 Yusuke Himeoka , Kunihiko Kaneko

We propose a new mechanism to increase the reactions ratesin multistable autocatalytic systems. The mechanism is based upon the possibility for the enhancement of the response of the system due to the cooperative behavior between the noise…

Condensed Matter · Physics 2009-10-31 T. Alarcon , A. Perez-Madrid , J. M. Rubi

Acid-base reactions are ubiquitous in nature. Understanding their mechanisms is crucial in many fields, from biochemistry to industrial catalysis. Unfortunately, experiments only give limited information without much insight into the…

Chemical Physics · Physics 2022-06-08 Emanuele Grifoni , GiovanniMaria Piccini , Michele Parrinello

We outline a basic strategy of how self-propulsion can be used to improve the yield of a typical colloidal self-assembly process. The success of this approach is predicated on the thoughtful design of the colloidal building block as well as…

Soft Condensed Matter · Physics 2016-08-24 S. A. Mallory , A. Cacciuto

Living systems contain intricate biochemical networks whose structure is closely related to their function and allows them to exhibit robust behavior in the presence of external stimuli. Such networks typically involve catalytic enzymes,…

Biological Physics · Physics 2025-10-27 Vincent Ouazan-Reboul , Ramin Golestanian , Jaime Agudo-Canalejo

The thermodynamic driving force in the self-assembly of the secondary structure of a class of donor-acceptor oligorotaxanes is elucidated by means of molecular dynamics simulations of equilibrium isometric single-molecule force spectroscopy…

Statistical Mechanics · Physics 2015-05-13 Ignacio Franco , George C. Schatz , Mark A. Ratner

In many scientific fields, there is an interest in understanding the way in which complex chemical networks evolve. The chemical networks which researchers focus upon, have become increasingly complex and this has motivated the development…

Catalysts speed up chemical reactions with no energy input and without being transformed in the process, therefore leaving equilibrium constants unchanged. Some catalysts, however, are much more efficient at accelerating one direction of a…

Soft Condensed Matter · Physics 2025-06-06 Sara Mahdavi , Yann Sakref , Olivier Rivoire

Two recent experiments studying the potential effect of entanglement on the emission properties of excited atoms produced in molecular photodissociation have been interpreted in conflicting ways. We present a theoretical analysis of the…

Quantum Physics · Physics 2017-04-05 Pedro Sancho

We use computer simulations to investigate self-assembly in a system of model chaperonin proteins, and in an Ising lattice gas. We discuss the mechanisms responsible for rapid and efficient assembly in these systems, and we use measurements…

Soft Condensed Matter · Physics 2011-12-09 James Grant , Robert L. Jack , Stephen Whitelam

Self-powered motion in catalytic colloidal particles provides a compelling example of active matter, i.e. systems that engage in single-particle and collective behavior far from equilibrium. The long-time, long-distance behavior of such…

Soft Condensed Matter · Physics 2017-10-25 Young-Moo Byun , Paul E. Lammert , Yiying Hong , Ayusman Sen , Vincent H. Crespi

The dynamical behavior of binary mixtures consisting of highly charged colloidal particles is studied by means of Brownian dynamics simulations. We investigate differently sized, but identically charged particles with nearly identical…

Soft Condensed Matter · Physics 2024-11-14 Daniel Weidig , Joachim Wagner
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