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Diffusion models have emerged as powerful tools for molecular generation, particularly in the context of 3D molecular structures. Inspired by non-equilibrium statistical physics, these models can generate 3D molecular structures with…

Chemical Physics · Physics 2025-05-16 Amira Alakhdar , Barnabas Poczos , Newell Washburn

In this work, the aim is to study the spread of a contagious disease and information on a multilayer social system. The main idea is to find a criterion under which the adoption of the spreading information blocks or suppresses the epidemic…

Physics and Society · Physics 2021-03-16 Semra Gunduc

To communicate at the nanoscale, researchers have proposed molecular communication as an energy-efficient solution. The drawback to this solution is that the histogram of the molecules' hitting times, which constitute the molecular signal…

Emerging Technologies · Computer Science 2018-08-21 Bayram Cevdet Akdeniz , Nafi Ahmet Turgut , H. Birkan Yilmaz , Chan-Byoung Chae , Tuna Tugcu , Ali Emre Pusane

We present a comprehensive approach to the modeling, performance analysis, and design of clustered molecular nanonetworks in which nano-machines of different clusters release an appropriate number of molecules to transmit their sensed…

Information Theory · Computer Science 2023-04-11 Seyed Mohammad Azimi-Abarghouyi , Harpreet S. Dhillon , Leandros Tassiulas

The dynamic interplay between collective cell movement and the various molecules involved in the accompanying cell signalling mechanisms plays a crucial role in many biological processes including normal tissue development and pathological…

Cell Behavior · Quantitative Biology 2016-07-20 Pia Domschke , Dumitru Trucu , Alf Gerisch , Mark A. J. Chaplain

Dynamic modulation of material properties in space and time enables powerful control over wave propagation, yet existing theories largely rely on idealized, nondispersive models. In realistic media, frequency dispersion can strongly reshape…

Optics · Physics 2026-04-02 Klaas De Kinder , Christophe Caloz

The transport properties of disordered systems are known to depend critically on dimensionality. We study the diffusion coefficient of a quantum particle confined to a lattice on the surface of a tube, where it scales between the 1D and 2D…

Mesoscale and Nanoscale Physics · Physics 2016-05-18 Chern Chuang , Chee Kong Lee , Jeremy M. Moix , Jasper Knoester , Jianshu Cao

This paper studies the impact of a transmitter's molecule generation process on the capacity of a concentration based Molecular Communication (MC) system. Constraints caused by the molecule generation process affect the availability of the…

Information Theory · Computer Science 2018-02-27 Hamid G. Bafghi , Amin Gohari , Mahtab Mirmohseni , Masoumeh Nasiri-Kenari

This work presents a new multi-chemical experimental platform for molecular communication where the transmitter can release different chemicals. This platform is designed to be inexpensive and accessible, and it can be expanded to simulate…

Emerging Technologies · Computer Science 2017-04-18 Nariman Farsad , David Pan , Andrea Goldsmith

Traditional molecular communications via diffusion (MCvD) systems have used baseband modulation techniques by varying properties of molecular pulses such as the amplitude, the frequency of the transversal wave of the pulse, and the time…

Emerging Technologies · Computer Science 2016-11-17 Weisi Guo , Bin Li , Siyi Wang , Wei Liu

Stochastic models of reaction-diffusion systems are important for the study of biochemical reaction networks where species are present in low copy numbers or if reactions are highly diffusion limited. In living cells many such systems…

Numerical Analysis · Mathematics 2015-06-15 Stefan Hellander

The society has a multi-layered structure, where the layers represent the different contexts. To model this structure we begin with a single-layer weighted social network (WSN) model showing the Granovetterian structure. We find that when…

Physics and Society · Physics 2016-09-28 Janos Kertesz , Janos Torok , Yohsuke Murase , Hang-Hyun Jo , Kimmo Kaski

In today's world, individuals interact with each other in more complicated patterns than ever. Some individuals engage through online social networks (e.g., Facebook, Twitter), while some communicate only through conventional ways (e.g.,…

Physics and Society · Physics 2015-09-15 Yong Zhuang , Osman Yağan

Molecular communication (MC) provides a foundational framework for information transmission in the Internet of Bio-Nano Things (IoBNT), where efficiency and reliability are crucial. However, the inherent limitations of molecular channels,…

Signal Processing · Electrical Eng. & Systems 2025-04-02 Hanlin Cai , Ozgur B. Akan

Abridged abstract: Inert interactions between randomly moving entities and spatial disorder play a crucial role in quantifying the diffusive properties of a system. These interactions affect only the movement of the entities, and examples…

Statistical Mechanics · Physics 2022-09-20 Seeralan Sarvaharman , Luca Giuggioli

In Diffusive Molecular Communication (DMC), information is transmitted by diffusing molecules. Synaptic signaling is a natural implementation of this paradigm. It is responsible for relaying information from one neuron to another, but also…

Subcellular Processes · Quantitative Biology 2021-10-01 Sebastian Lotter , Arman Ahmadzadeh , Robert Schober

It has been shown experimentally that contact interactions may influence the migration of cancer cells. Previous works have modelized this thanks to stochastic, discrete models (cellular automata) at the cell level. However, for the study…

Cell Behavior · Quantitative Biology 2009-03-26 Christophe Deroulers , Marine Aubert , Mathilde Badoual , Basil Grammaticos

Information on social media spreads through an underlying diffusion network that connects people of common interests and opinions. This diffusion network often comprises multiple layers, each capturing the spreading dynamics of a certain…

Social and Information Networks · Computer Science 2024-10-08 Yan Xia , Ted Hsuan Yun Chen , Mikko Kivelä

This paper proposes a control theoretic framework to model and analyze the self-organized pattern formation of molecular concentrations in biomolecular communication networks, emerging applications in synthetic biology. In biomolecular…

Molecular Networks · Quantitative Biology 2019-01-08 Yutaka Hori , Hiroki Miyazako , Soichiro Kumagai , Shinji Hara

The potential of applying diffusion models (DMs) for multiple antenna communications is discussed. A unified framework of applying DM for multiple antenna tasks is first proposed. Then, the tasks are innovatively divided into two…

Signal Processing · Electrical Eng. & Systems 2025-02-05 Jia Guo , Xiaoxia Xu , Yuanwei Liu , Arumugam Nallanathan