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We investigate a lattice-fluid model defined on a two-dimensional triangular lattice, with the aim of reproducing qualitatively some anomalous properties of water. Model molecules are of the "Mercedes Benz" type, i.e., they possess a D3…

Soft Condensed Matter · Physics 2007-05-23 C. Buzano , E. de Stefanis , A. Pelizzola , M. Pretti

The processes of Coulomb gas ordering in 3D layered system are studied by means of Brownian dynamics approach. It is found that at different densities of the carriers the 3D lattice of charges as well as new specific structures are possible…

Strongly Correlated Electrons · Physics 2007-05-23 Yu. G. Pashkevich , A. E. Filippov

We study a solution of interacting semiflexible polymers with curvature energy in poor-solvent conditions on the d-dimensional cubic lattice using mean-field theory and Monte Carlo computer simulations. Building upon past studies on a…

Soft Condensed Matter · Physics 2024-07-02 Davide Marcato , Achille Giacometti , Amos Maritan , Angelo Rosa

We study the localisation of lattice polymer models near a permeable interface in two dimensions. Localisation can arise due to an interaction between the polymer and the interface, and can be altered by a preference for the bulk solvent on…

Statistical Mechanics · Physics 2024-07-24 C J Bradly , N R Beaton , A L Owczarek

Motivated by the idea that intrinsically disordered proteins (IDPs) condense into liquid-like droplets within cells, we carry out Monte Carlo simulations of a polymer lattice model to study the relationship between charge patterning and…

Soft Condensed Matter · Physics 2019-12-11 Nicholas A. S. Robichaud , Ivan Saika-Voivod , Stefan Wallin

In the last decade, the use of Machine and Deep Learning (MDL) methods in Condensed Matter physics has seen a steep increase in the number of problems tackled and methods employed. A number of distinct MDL approaches have been employed in…

Computational Engineering, Finance, and Science · Computer Science 2023-03-08 Edoardo Di Napoli , Xinzhe Wu , Thomas Bornhake , Piotr M. Kowalski

There are three fundamental physical processes that gives rise to the morphology of a surface: deposition, surface diffusion and desorption. The characteristics of the interfaces generated by the combination of deposition and surface…

Statistical Mechanics · Physics 2007-05-23 Juan R. Sanchez

Growth of hard--rod monolayers via deposition is studied in a lattice model using rods with discrete orientations and in a continuum model with hard spherocylinders. The lattice model is treated with kinetic Monte Carlo simulations and…

Soft Condensed Matter · Physics 2017-04-05 M. Klopotek , H. Hansen-Goos , M. Dixit , T. Schilling , F. Schreiber , M. Oettel

Theoretical studies of protein folding on lattice models relie on the assumption that water close to amino-acids is always in thermal equilibrium all along the folding pathway. Within this framework, it has always been considered that…

Biological Physics · Physics 2012-02-08 Olivier Collet

By means of sophisticated Monte Carlo methods, we investigate the conformational phase diagram of a simple model for flexible polymers with explicit thickness. The thickness constraint, which is introduced geometrically via the global…

Soft Condensed Matter · Physics 2009-02-06 Thomas Vogel , Thomas Neuhaus , Michael Bachmann , Wolfhard Janke

In this paper we extend the recent theory of shear-localization in 2-dimensional amorphous solids to 3-D. In 2-D the fundamental instability of shear-localization is related to the appearance of a line of displacement quadrupoles, that…

Soft Condensed Matter · Physics 2015-12-11 Ratul Dasgupta , Oleg Gendelman , Pankaj Mishra , Itamar Procaccia , Carmel A. B. Z. Shor

We use the classical version of the density-functional theory in the weighted-density approximation to build up the entire phase diagram and the interface structure of a two-dimensional lattice-gas model which is known, from previous…

Statistical Mechanics · Physics 2011-10-25 S. Prestipino , P. V. Giaquinta

Marangoni instabilities in binary mixtures are different from those in pure liquids. In contrast to a large amount of experimental work on Marangoni convection in pure liquids, such experiments in binary mixtures are not available in the…

Fluid Dynamics · Physics 2009-11-13 Jie Zhang , Robert P. Behringer , Alexander Oron

The precise sequence of aminoacids plays a central role in the tertiary structure of proteins and their functional properties. The Hydrophobic-Polar lattice models have provided valuable insights regarding the energy landscape. We…

Biomolecules · Quantitative Biology 2015-03-30 K. Silpaja Chandrasekar , M. V. Sangaranarayanan

A continuum dynamical model is developed to determine the morphological and compositional instabilities on the free surface of heteroepitaxial alloy films in the absence of growth. We use linear stability analysis to study the early…

Statistical Mechanics · Physics 2009-11-07 Zhi-Feng Huang , Rashmi C. Desai

A description of phase separation kinetics for solid binary (A,B) mixtures in thin film geometry based on the Kawasaki spin-exchange kinetic Ising model is presented in a discrete lattice molecular field formulation. It is shown that the…

Statistical Mechanics · Physics 2009-11-13 Subir K. Das , Jürgen Horbach , Kurt Binder

Two-dimensional integral field surveys such as ATLAS^3D are producing rich observational data sets yielding insights into galaxy formation. These new kinematic observations have highlighted the need to understand the evolutionary mechanisms…

Astrophysics of Galaxies · Physics 2015-06-22 Christopher E. Moody , Aaron J. Romanowsky , Thomas J. Cox , G. S. Novak , Joel R. Primack

The 3D organisation of the genome in interphase cells is not a randomly folded polymer. Rather, experiments show that chromosomes arrange into a network of 3D compartments that correlate with biological processes, such as transcription,…

Biological Physics · Physics 2018-11-06 Kumar Rajendra , Ludvig Lizana , Per Stenberg

The electromagnetic properties of 2D materials are modeled either as single sheets with a surface susceptibility or conductivity, or as thin films of finite thickness with an effective permittivity. Their intrinsic anisotropy, however, has…

Laminar shear flows can display large non-modal perturbation growth, often through the lift-up mechansm, and can undergo subcritical transition to turbulence. The process is three-dimensional. Two-dimensional (2D) spanwise-independent…

Fluid Dynamics · Physics 2024-05-01 Sharath Jose