Related papers: Coding methods for string reconstruction from erro…
We propose an unsupervised hashing method which aims to produce binary codes that preserve the ranking induced by a real-valued representation. Such compact hash codes enable the complete elimination of real-valued feature storage and allow…
In this paper, we investigate the problem of designing $(n, N; \mathcal{B})$-reconstruction codes for $N\in \{14,11,9,5\}$, where $\mathcal{B}$ is the single-deletion single-substitution ball function that maps a sequence to the set of all…
We consider the problem of constructing binary codes to recover from $k$-bit deletions with efficient encoding/decoding, for a fixed $k$. The single deletion case is well understood, with the Varshamov-Tenengolts-Levenshtein code from 1965…
Many problems in Computer Science can be abstracted to the following question: given a set of objects and rules respectively, which new objects can be produced? In the paper, we consider a succinct version of the question: given a set of…
We study the query complexity of exactly reconstructing a string from adaptive queries, such as substring, subsequence, and jumbled-index queries. Such problems have applications, e.g., in computational biology. We provide a number of new…
Given a probability distribution over a set of n words to be transmitted, the Huffman Coding problem is to find a minimal-cost prefix free code for transmitting those words. The basic Huffman coding problem can be solved in O(n log n) time…
Type recovery is a crucial step in binary code analysis, holding significant importance for reverse engineering and various security applications. Existing works typically simply target type identifiers within binary code and achieve type…
Grammar compression represents a string as a context free grammar. Achieving compression requires encoding such grammar as a binary string; there are a few commonly used encodings. We bound the size of practically used encodings for several…
Due to its high data density and longevity, DNA is considered a promising medium for satisfying ever-increasing data storage needs. However, the diversity of errors that occur in DNA sequences makes efficient error-correction a challenging…
A method to construct and count all the linear codes (of arbitrary length) in $\mathbb{F}_{4}$ that are invariant under reverse permutation and that contain the repetition code is presented. These codes are suitable for constructing DNA…
The noise model of deletions poses significant challenges in coding theory, with basic questions like the capacity of the binary deletion channel still being open. In this paper, we study the harder model of worst-case deletions, with a…
In this paper, we investigate the problem of recovering source information from an incomplete set of network coded data. We first study the theoretical performance of such systems under maximum a posteriori (MAP) decoding and derive the…
Traditional error-correcting codes (ECCs) assume a fixed message length, but many scenarios involve ongoing or indefinite transmissions where the message length is not known in advance. For example, when streaming a video, the user should…
Based on the Breslauer-Italiano online suffix tree construction algorithm (2013) with double logarithmic worst-case guarantees on the update time per letter, we develop near-real-time algorithms for several classical problems on strings,…
In the paper, the Levenshtein's sequence reconstruction problem is considered in the case where at most $t$ substitution errors occur in each of the $N$ channels and the decoder outputs a list of length $\mathcal{L}$. Moreover, it is…
We consider the decoding of linear and array codes from errors when we are only allowed to download a part of the codeword. More specifically, suppose that we have encoded $k$ data symbols using an $(n,k)$ code with code length $n$ and…
A new class of folded subspace codes for noncoherent network coding is presented. The codes can correct insertions and deletions beyond the unique decoding radius for any code rate $R\in[0,1]$. An efficient interpolation-based decoding…
We investigate the task of retrieving information from compositional distributed representations formed by Hyperdimensional Computing/Vector Symbolic Architectures and present novel techniques which achieve new information rate bounds.…
This work constructs codes that are efficiently decodable from a constant fraction of \emph{worst-case} insertion and deletion errors in three parameter settings: (i) Binary codes with rate approaching 1; (ii) Codes with constant rate for…
We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivations including DNA computing and DNA self-assembly. Previous…